Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1622 ATGGCCTTTCAGGATTTCGACCTCATTTCGGAACGGCGTAGAAATGACAATAGACAAAAGACCAGGAAGAGAATCATCATTGGTGTTGTTTCTTCCATTCTCCTTGTTGGTCTAATAGGTTGTGCATTCTTTGTTGCTACCACACATTACGGTTTAGGACAGGAAAAAAATGAAGAAGCTTCTTCTGCAAGTAACCAGATTACACATTCTGAAAGGGTTGTGAAGATGGTATGCAGCTCAGCAGATTACAAACAAAAATGTGAAGGACCATTGACTGAGGCTGTGAAGAAGGATCCTAATCTCACACATCCTAAAGATATTCTCAAACTCTATGTTAAATTTGCTGAGGAAGAAGTTAGCAAGGCCTTTAATAAAACCAACACCTTGAAGTTTGAGTCTAAGGAAGAGAAAGGTGCATTTGAAGATTGCAAGCAATTGTTTCGAGATGCTAAGGAAGATTTGGCAACCTCTTTATCTGAACTTGGTAGGGTTGATTTCAATAAATTTTCATCAAAGTCTCCTGATTTTAATAGTTGGCTAAGTGCTGTTATCTCTTACCAACAAACATGTATTGATGGTTTTCCTGAAAATTCTAAGTTGAAGAAAGATCTTAATACTCTCTTCAAGGATTCTAGAGAATTCATTAGCAACTCCCTTGCCATTGTGAAAAAGGTTGGATCACTTCTTTCATCATTCCAGTCGATTGGTGGTCGTTTGTTGTCGGAGAATTCCGAGACCAATGTTTATTCTTTGGATGAAGAAGGTTACCCTGAATGGTTGAGACATGGGGATAGGAGGGTTTTGAAGGCTGCTGATGACAAACCTACACCTAATGTTACTGTTGCAAAAGATGGCAGTGGAAACTTTAAAACCATCTCTGAAGCTTTGAAAGCCATCCCTGAAACATATAAGGGACGATATGTGGTTTTTGTCAAAGAAGGAGTGTACGATGAAACAGTGACAATAACAAAGAAAATGCAAAATATCACCCTTTATGGTGAAGGATCACAAAAAAGTATTATCACTGGCAACAAAAACTTCAGGGATGGAGTCAGGACGTTCCTAACTGCAAGTTTTGTTGTCCTTGGAGAGGGATTTATAGGCAAAGCAATGGGATTCAGAAACACTGCTGGACCAGATGGACATCAAGCAGTGGCTGCTAGAGTGCAAGCAGATCGTGCAGTATTCGCTAACTGTCGCTTCGAGGGATACCAAGACACTCTATACACTCAAACCCACAGACAATTCTATCGTAGTTGCATCATTACAGGGACCATTGATTTCATCTTTGGTGATGCAGCTGTTGTGTTCCAGAACTGCATCATGAATGTTAGAAAACCAATGGACAACCAACAGAACATGGTCACAGCCCAAGGGAGAATGGACAAGCAACAAACCACTGGCATAGTTCTTCAAAAATGTCTTATCAAAGCCGATGATTCATTGGTTCCAGTGAAGGACAAAATCAGGAGTTACCTTGGAAGGCCATGGAAAGAGTACTCAAGAACCATTGTTATGGAATCTGAGATAGGTGAGTTCATTCACCCTGAAGGGTGGACACCTTGGGCTGGTAACTTTGCACTAGACACATTGTATTATGCCGAGTTCAACAACACAGGACCTGGTGCTAGCACCAAAGCTAGGGTCAAGTGGCCTGGCTACAAGGTTATTAACAAGGAGGATGCTACCAAGTTCTCAGTGGCTCAATTCTTGAAAGGCACTTGGGTCCAAGGCACAGGCGTACCTTCAATTCAAGGAATGTATTATTGA 1770 0.4113 MAFQDFDLISERRRNDNRQKTRKRIIIGVVSSILLVGLIGCAFFVATTHYGLGQEKNEEASSASNQITHSERVVKMVCSSADYKQKCEGPLTEAVKKDPNLTHPKDILKLYVKFAEEEVSKAFNKTNTLKFESKEEKGAFEDCKQLFRDAKEDLATSLSELGRVDFNKFSSKSPDFNSWLSAVISYQQTCIDGFPENSKLKKDLNTLFKDSREFISNSLAIVKKVGSLLSSFQSIGGRLLSENSETNVYSLDEEGYPEWLRHGDRRVLKAADDKPTPNVTVAKDGSGNFKTISEALKAIPETYKGRYVVFVKEGVYDETVTITKKMQNITLYGEGSQKSIITGNKNFRDGVRTFLTASFVVLGEGFIGKAMGFRNTAGPDGHQAVAARVQADRAVFANCRFEGYQDTLYTQTHRQFYRSCIITGTIDFIFGDAAVVFQNCIMNVRKPMDNQQNMVTAQGRMDKQQTTGIVLQKCLIKADDSLVPVKDKIRSYLGRPWKEYSRTIVMESEIGEFIHPEGWTPWAGNFALDTLYYAEFNNTGPGASTKARVKWPGYKVINKEDATKFSVAQFLKGTWVQGTGVPSIQGMYY 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1622 589 TIGRFAM PME_inhib: pectinesterase inhibitor domain 62 224 IPR006501 GO:0004857
Lal14g1622 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 225 IPR035513 -
Lal14g1622 589 SUPERFAMILY Pectin lyase-like 276 585 IPR011050 -
Lal14g1622 589 PANTHER PECTINESTERASE 14 587 - -
Lal14g1622 589 SMART PMEI_2 69 221 IPR006501 GO:0004857
Lal14g1622 589 Pfam Pectinesterase 278 573 IPR000070 GO:0030599|GO:0042545
Lal14g1622 589 ProSitePatterns Pectinesterase signature 2. 422 431 IPR033131 -
Lal14g1622 589 Gene3D - 272 587 IPR012334 -
Lal14g1622 589 CDD PMEI-like_3 77 224 - -
Lal14g1622 589 Pfam Plant invertase/pectin methylesterase inhibitor 74 221 IPR006501 GO:0004857
Lal14g1622 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 226 IPR035513 -
Lal14g1622 589 PANTHER PECTINESTERASE 14 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1622 Lal-Chr14 16637449 16639513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1622 1 588 Carbohydrate Esterase AT4G33230 47.954 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1622 - - gmx:100784679 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1622 14 16637449 16639513 Lal14g1622 14 16637449 16639513 ECH
Lal14g1622 14 16637449 16639513 Lal7g1027 7 16426240 16428238 LSH
Lal14g1622 14 16637449 16639513 Lal17g1467 17 16038618 16039696 PCT
Lal14g1622 14 16637449 16639513 Lal4g1491 4 19062626 19063327 PCT
Lal17g1467 17 16038618 16039696 Lal14g1622 14 16637449 16639513 PCT
Lal4g1491 4 19062626 19063327 Lal14g1622 14 16637449 16639513 PCT