Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1586 GCTTGGGCTGGCCCATTGACGAATATCGCCCCATCACAAAACACGAGTAGTGATCGCTCTCTTTTCCCTCCTCCTCCTCCTTCATCGTCGTCGTTGTCCTATTCTCGTCATTTACATACATCTCCGTATATTCGTATACCATACGCAGAAGAAGGTATAAACCTCTCTCTCAATTCAATTCGTACCTTAGGGTTAGGGTTCCGCACAGTAGCCAAGCTGGATAGGCACAGAGGAGACCGCTACGGCAACAACAATGATCCACACCCGAGGACTCAATCTCGTTTCTCTGATTCTTCCATGAACTATCACAACCCTCGCCGGAGCCCCTCCTCCGGCCTCCGTGGTCCTGCTCCCCCTCACCACCGTGCATTTGATAGTCCTCCCAGTTGGTCTCCTGGCAGGGGCGGAGGGTTCCGACCAAGTGGTGGTGGCGGCGAAGGGTTCCGACCAATTGGTGGTGGCGGCGAAGGGTTCAGGCCAATGGGTGATCAGGGTCGTGGAGAATATGGTGGCTTCAATGCTCATCAGCAGCAGCAGCAACCACCATTATCTGGTCAGAAACGAGGGTTTCCATTCTCTGGACGGGAAGGTTCGCCTGATCGTTTTGATGGTGGAAGTTTTGCCAAACTTTTTGTTGGATCCGTTCCCCGTACAGCCACTGAAGAAAATATTCGGCCTTTATTTGAGGAACATGGGAATGTGATTGAGGTTGCCCTGATCAAAGATAAAAAAACTGGACAGCATCAAGGCTTGTTGGGTTTGGTTCCGCCTCGTCCTGTCATACCAGAAGGAGGCAAGACATGTAAACCTGTAAGCTGCTCTTTGTATAGCAGATGGGATCTTGGAGGACCTAAAGATCCTGCTCTTGCAATTGTAGCTGCAGCAGTGGCGGCATTACCCAACAGTGTGTATGCAACTTCTATGCGAAAACTAAATTATAGTCTCTCGTATACTTTGAAGTGCCATTTCGATTTTCGTCTGCAACTGGCAGTTGGTTTTATAAATTCCTTGTGGGATAACATGGGACCTGGTTGTTGTTTCATAAAGTATGCTACGTCTGAAGATGCTGACCAGGCAATTAGAGCATTGCACAATCAACATACTCTTCCTGGAGGTATTGGTCCAATCCAAGTGCGGTATGCTGATGGTGAACGGGAACGCCTCGGTGCAGTAGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACTGTAAAGGAAGTTGAGGAAATATTCTCAAAATATGGGCGCGTAGAAGATGTTTATCTTATGCGTGATGAAAGGAAACAAAGCCGTGGTTGTGGTTTTGTGAAGTACTTGCATCGAGATATGGCACTGGCTGCTATAAATGCACTTAATGGAGTTTATACAATGAGAGGTTGTGATCAACCACTTATTGTCCGGTTTGCTGATCCTAAAAGACCTCGTCAAGGAGATTCCAGGGGTCCTGCATTTGGAGCTCCAGGACCAGGTCCTAAATTTGACCCACCAGGCGCAAGATTTCCACCCAATATTAGTGTTCCTATGGGTGATCATGTGCCTCACCCGAATGCATGGCGTCCAATGCATCCACCAAATATGGGACCATCCTCTAATGCTGATCTCCATGGTATGGGGCCTCCATGGCTTCCAAGATCTGGTGACACTGTATTGGCTATAAACACAGGTGGTCCTATGACTGGCATGGGAGGCCCCATAGATGGCCGCTTTCAGAATGAATCCCAGTCATCAATGTCACAACAGAGTTTCAACCAGCCTGTGCCGCAAATTTCACCAGTCAACCAACAAATATCACCAATGCAAAAACCTGCTCAGTCATCTCAGGAGTTGCCACCTGATTACCAGTTGTACCCTCAAGCACCAATGCCCTACTCCCAAATGTCATCACAATCATCTCTTAGGCTGGTTGGCCAACCACAACTTCCTTTCTCTGCTGGTCAGCATGCACTTGGCACAAGTGGACAATTTCCAACTTCTCATCCCCAAACTCAGCAGAGTGCTTTGCCTGCTTCAAATCCTCGGATACCTCATGATAGCAGCTTCCAACCTAATGCAGCATTTAACACTCCTAGTCAACAGCAAGTTCCAACGTCTGTGCCGCTTCAGCCATTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCTCAGATGTTGTCACAACAAAAACAGACTTTACAAGCAAGTCTTCATTCATCTCAGCAGGCATTCTCCCAGCTTCAACAACAAGTACAGATGATGCAACCATCTAGTCAAGCATCGACGATGCAGCAAAATGCAGCAACGGCTAACCAGCAGCAGGTTCAATGGGCTGGGGCTGTACCACAAGCTAGCAATCCTGCAGCTGCACACATTGGAGATGTGCCTTCATCCATATCTGCTACTACTGCCACAGCAGGGATAAGCCAGAACATAGCTCTTGCTAAATGTGATTGGACAGAACATTTATCTCCTGAGGGCTTCAAGTACTACTACAATAGTGTGACTGGTGAAAGTCGGTGGGAGAAACCGGAGGAGTTGGCATTATCTGAACAGCAAAAGCAACAGCGAAGGCTACCTAGTCAGCACTCACAAACTCAGTCACAATCTTCAATGATATCTTCCCAGCAAGTTCCACAAATTCAACAGGCTCAGGCTCATAGTCACTTCCAAGGACAGATTCTCCAGCAGCAACAAATGCAGCAGCCTTCTTTGTCTTCTTCGGCGTATGGAGTCACAGGTGATCAAAATGTTCAGGACGTTGGTTACAAACAGTTTCAGGCATCACCTATTTCTGCTGGTGATCCTGGACACTACTCACAGGGTATTCATACTACACAAGAGTGGATGTGGAAAAACAAGCCAGCAGGTTACCTTGCATCCACTCATCTACCCCCTCCCTGA 2883 0.478 AWAGPLTNIAPSQNTSSDRSLFPPPPPSSSSLSYSRHLHTSPYIRIPYAEEGINLSLNSIRTLGLGFRTVAKLDRHRGDRYGNNNDPHPRTQSRFSDSSMNYHNPRRSPSSGLRGPAPPHHRAFDSPPSWSPGRGGGFRPSGGGGEGFRPIGGGGEGFRPMGDQGRGEYGGFNAHQQQQQPPLSGQKRGFPFSGREGSPDRFDGGSFAKLFVGSVPRTATEENIRPLFEEHGNVIEVALIKDKKTGQHQGLLGLVPPRPVIPEGGKTCKPVSCSLYSRWDLGGPKDPALAIVAAAVAALPNSVYATSMRKLNYSLSYTLKCHFDFRLQLAVGFINSLWDNMGPGCCFIKYATSEDADQAIRALHNQHTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDERKQSRGCGFVKYLHRDMALAAINALNGVYTMRGCDQPLIVRFADPKRPRQGDSRGPAFGAPGPGPKFDPPGARFPPNISVPMGDHVPHPNAWRPMHPPNMGPSSNADLHGMGPPWLPRSGDTVLAINTGGPMTGMGGPIDGRFQNESQSSMSQQSFNQPVPQISPVNQQISPMQKPAQSSQELPPDYQLYPQAPMPYSQMSSQSSLRLVGQPQLPFSAGQHALGTSGQFPTSHPQTQQSALPASNPRIPHDSSFQPNAAFNTPSQQQVPTSVPLQPFQPLQQSPSQLAQMLSQQKQTLQASLHSSQQAFSQLQQQVQMMQPSSQASTMQQNAATANQQQVQWAGAVPQASNPAAAHIGDVPSSISATTATAGISQNIALAKCDWTEHLSPEGFKYYYNSVTGESRWEKPEELALSEQQKQQRRLPSQHSQTQSQSSMISSQQVPQIQQAQAHSHFQGQILQQQQMQQPSLSSSAYGVTGDQNVQDVGYKQFQASPISAGDPGHYSQGIHTTQEWMWKNKPAGYLASTHLPPP 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1586 960 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 250 IPR000504 GO:0003723
Lal14g1586 960 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 395 462 IPR000504 GO:0003723
Lal14g1586 960 MobiDBLite consensus disorder prediction 559 720 - -
Lal14g1586 960 MobiDBLite consensus disorder prediction 490 504 - -
Lal14g1586 960 SMART rrm1_1 209 379 IPR000504 GO:0003723
Lal14g1586 960 SMART rrm1_1 394 469 IPR000504 GO:0003723
Lal14g1586 960 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 393 473 IPR000504 GO:0003723
Lal14g1586 960 MobiDBLite consensus disorder prediction 646 720 - -
Lal14g1586 960 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 250 IPR000504 GO:0003723
Lal14g1586 960 CDD RRM2_FCA 394 473 IPR034645 -
Lal14g1586 960 PANTHER RNA BINDING PROTEIN 343 882 - -
Lal14g1586 960 PANTHER RNA BINDING PROTEIN 148 250 - -
Lal14g1586 960 MobiDBLite consensus disorder prediction 85 108 - -
Lal14g1586 960 SMART ww_5 807 839 IPR001202 GO:0005515
Lal14g1586 960 MobiDBLite consensus disorder prediction 473 539 - -
Lal14g1586 960 CDD WW 809 839 IPR001202 GO:0005515
Lal14g1586 960 SUPERFAMILY RNA-binding domain, RBD 200 387 IPR035979 GO:0003676
Lal14g1586 960 MobiDBLite consensus disorder prediction 77 199 - -
Lal14g1586 960 ProSiteProfiles WW/rsp5/WWP domain profile. 812 839 IPR001202 GO:0005515
Lal14g1586 960 SUPERFAMILY WW domain 811 842 IPR036020 GO:0005515
Lal14g1586 960 MobiDBLite consensus disorder prediction 1 35 - -
Lal14g1586 960 ProSitePatterns WW/rsp5/WWP domain signature. 812 837 IPR001202 GO:0005515
Lal14g1586 960 SUPERFAMILY RNA-binding domain, RBD 393 492 IPR035979 GO:0003676
Lal14g1586 960 MobiDBLite consensus disorder prediction 622 639 - -
Lal14g1586 960 MobiDBLite consensus disorder prediction 836 892 - -
Lal14g1586 960 MobiDBLite consensus disorder prediction 570 614 - -
Lal14g1586 960 Gene3D - 388 481 IPR012677 -
Lal14g1586 960 Gene3D - 204 387 IPR012677 -
Lal14g1586 960 Gene3D - 807 852 - -
Lal14g1586 960 Pfam WW domain 811 837 IPR001202 GO:0005515
Lal14g1586 960 MobiDBLite consensus disorder prediction 846 892 - -
Lal14g1586 960 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 148 250 - -
Lal14g1586 960 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 343 882 - -
Lal14g1586 960 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1586 Lal-Chr14 16405738 16415989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1586 344 479 Eukaryotic Initiation Factors Gene Family AT1G49760 27.451 8.22e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1586 - - gmx:100798390 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1586 14 16405738 16415989 Lal14g1586 14 16405738 16415989 ECH
Lal14g1586 14 16405738 16415989 Lal7g0984 7 16112863 16122818 LSH