Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1571 ATGGGAAGAGCTCCTTGCTGTGAGAAAGTAGGGTTAAAGAAAGGAAGATGGAGTGCTGAAGAGGATAAGATCTTAACTGATTATATCCAACAACATGGTGAAGGATCATGGAGGTCTTTGCCCAAGAATGCAGGTTTGTTGAGATGTGGAAAGAGTTGCAGACTGAGGTGGATCAACTACTTGAGATCAGATGTGAAGAGAGGAAACATCACTCATCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAACAGGTGGTCTGTCATAGCAGGAAATTTACCGGGAAGGACAGATAATGAGATAAAGAACTATTGGAACTCTCATTTAAGGAGAAAGATTTACTGCTTCATGAAATCCTTGAATGAATCACTTCCTTCTATTGACATGGCTGTAGCTGCTATATCTAAGAGAAGATCAATGGTTCGACCACCCATGCACGACAACAAAGGGAATACAAGGGAAGTGGTGGTTCAACCAATGCCTAAAAGATCAAAACCAACAACTTCACCAAGTAATTTTAATGCATCTTGGAGCCAAATGCATCACTATGGAGAAGACATAAAAGGCATTAATATAGAGGGCAACACAAATGATAGTACAATGTTAGGGTCCTCATCCTCATGCCCCAGCATGAATGAAAGTAGTGTTGAGGAGGCCTTGGCACCATATGAATGGTTAGATGATGAAATTATGAAACTAAGTTACATGTTTGAAAATGGTGGAATGATGATAACCAATGAAGAAGAGGGTAATAGAAATAGTAGCAAGAGTGGACTATTATTGGGTGAGGAGAGCAAGAGTGGTGTATGGAACACTGAGAGTGGAGAGTGGAATAACAATAGTAGTTCTTCCTCAGTGAATCATGTGTATGATTATCATTGGTCTGATATGCATTTGGCAGGAAATAGTAGTGTTCATCAATCCTATAATCAGTGGAACTTTGGTGAAGAACAAGACCAGTTATGGGGTACTAGCAGCATTGCTGAACTCTATGGCTTTCATCACTGA 1017 0.4022 MGRAPCCEKVGLKKGRWSAEEDKILTDYIQQHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITHQEEEIIVKLHAVLGNRWSVIAGNLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESLPSIDMAVAAISKRRSMVRPPMHDNKGNTREVVVQPMPKRSKPTTSPSNFNASWSQMHHYGEDIKGINIEGNTNDSTMLGSSSSCPSMNESSVEEALAPYEWLDDEIMKLSYMFENGGMMITNEEEGNRNSSKSGLLLGEESKSGVWNTESGEWNNNSSSSSVNHVYDYHWSDMHLAGNSSVHQSYNQWNFGEEQDQLWGTSSIAELYGFHH 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1571 338 Gene3D - 71 116 - -
Lal14g1571 338 SMART sant 13 63 IPR001005 -
Lal14g1571 338 SMART sant 66 114 IPR001005 -
Lal14g1571 338 CDD SANT 16 61 IPR001005 -
Lal14g1571 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal14g1571 338 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 297 - -
Lal14g1571 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal14g1571 338 PANTHER MYB TRANSCRIPTION FACTOR 2 297 - -
Lal14g1571 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal14g1571 338 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal14g1571 338 CDD SANT 71 112 IPR001005 -
Lal14g1571 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lal14g1571 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lal14g1571 338 Gene3D - 13 66 - -
Lal14g1571 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1571 Lal-Chr14 16303992 16306355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1571 1 236 MYB Transcription Factor Family AT5G49330 51.261 6.78e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal14g1571 Myb_DNA-binding 9.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1571 K09422 - gmx:100805532 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1571 14 16303992 16306355 Lal14g1571 14 16303992 16306355 ECH