Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1569 ATGTCCCTCAGGCCAAATGACAGAACCGAGGGTCGCCGCAACCGTTACAAGGTCGCCGTCGACGCCGAAGAAGGCCGCCGCAGAAGAGAGGACAACATGGTTGAGATCCGCAAGAACAAGCGCGAAGAGAGCCTTCAGAAGAAGCGTCGCGAAGGCTTTGCAGCTCAGCAACTGTTAGTTACTCCTCTTAACAACCTCGACAAAAAGTTAGAGGCTCTTCCTGCAATGGTCGCTGGTGTTTGGTCAGATGATAATGCTCCGCAACTGGAAGCCACCACACAATTTCGGAAGTTGCTTTCAATTGAGCGAAGTCCTCCGATCGAGGAAGTTATTCAGTCTGGTGTTGTTCCTCGTTTTGTTCAGCTTCTCGGTAGGGAGGATTTCCCTCAAGTCCAGTTTGAGGCTGCATGGGCTCTCACAAACATTGCATCTGGAACTTCCGAGAACACAAAGGTGGTGATTGATCATGGAGCAGTTCCCATATTTGTGAAGCTACTCAGTTCTCCTAGTGATGATGTTCGGGAGCAGGCTGTGTGGGCATTGGGAAATGTTGCTGGTGACTCTCCTAGGTGCCGTGATCTAGTTCTTGGCCAAGGTGCCCTTATTCCACTATTGGCTCAGTTGAATGAGCATGCAAAACTATCAATGCTGAGAAATGCTACATGGACATTATCAAACTTTTGCAGGGGCAAGCCACAGCCTCCATTTGAGCAAGTGAGACCAGCACTTCCAGCTCTTGAGCGTTTAGTTTTTTCCAATGATGAGGAAGTTCTGACAGATGCATGCTGGGCACTATCATATCTTTCTGATGGCACAAATGATAAAATTCAAGCAGTTATTGAGACAGGTGTATGTACCCGATTGGTGCAGCTCCTTCTGCACCCGTCTCCCTCAGTGCTGATTCCTGCTCTTCGCACAGTAGGAAATATTGTGACCGGGGATGATATGCAGACTCAGAGTATCATCAATCATGGTGCACTCCCAAGCCTTTTGAGCCTGTTGACTCATAATCATAAAAAAAGCATTAAAAAGGAAGCTTGCTGGACTATATCAAATATTACAGCTGGAAACAAGGAACAAATACAGTCTGTTATTGAAGCTGGCCTTATTGGTCCTCTTGTCATTCTTCTTCAAAATGCGGAGTTTGACATTAAAAAAGAAGCTGCATGGGCAATCTCTAATGCCACATCTGGTGGTAGTCATGAGCAGATCAAGTACTTGGTGAGTCAGGGTTGCATAAAGCCTCTTTGTGAACTGCTTATTTGCCCCGACCCAAGAATTATCACCGTCTGTTTGGAAGGCCTGGAGAATATTCTGAAGGTGGGAGAAGCAGAAAAGAACCTAGGTAACACTGGAGATGTCAATTTGTATGCTCAAATGATAGATGATGATGAGGGATTGGAGAAGATTGAAAACCTACAAAGTCATGACAACAATGAAATATATGAGAAGGCTGTTAAAATGCTTGAAACATACTGGTTGGAAGATGAAGATGACGAGGCACTACCTCCCGGTAATGAAGCTCAAGCTGGTTTCAACTTTGGAGGCCACGAGCTCCCAGTCCCATCTGGTGGATTCAACTTTAGCTGA 1590 0.4604 MSLRPNDRTEGRRNRYKVAVDAEEGRRRREDNMVEIRKNKREESLQKKRREGFAAQQLLVTPLNNLDKKLEALPAMVAGVWSDDNAPQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQLLGREDFPQVQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLGQGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIETGVCTRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQSIINHGALPSLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQSVIEAGLIGPLVILLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCELLICPDPRIITVCLEGLENILKVGEAEKNLGNTGDVNLYAQMIDDDEGLEKIENLQSHDNNEIYEKAVKMLETYWLEDEDDEALPPGNEAQAGFNFGGHELPVPSGGFNFS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1569 529 PANTHER IMPORTIN ALPHA 2 519 - -
Lal14g1569 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 114 157 IPR000225 GO:0005515
Lal14g1569 529 Pfam Importin beta binding domain 12 93 IPR002652 GO:0006606|GO:0061608
Lal14g1569 529 Gene3D - 11 50 IPR036975 GO:0006606
Lal14g1569 529 MobiDBLite consensus disorder prediction 1 28 - -
Lal14g1569 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 157 199 IPR000225 GO:0005515
Lal14g1569 529 PIRSF Importin_alpha 2 528 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lal14g1569 529 Pfam Armadillo/beta-catenin-like repeat 273 311 IPR000225 GO:0005515
Lal14g1569 529 Pfam Armadillo/beta-catenin-like repeat 315 355 IPR000225 GO:0005515
Lal14g1569 529 Pfam Armadillo/beta-catenin-like repeat 401 438 IPR000225 GO:0005515
Lal14g1569 529 Pfam Armadillo/beta-catenin-like repeat 357 396 IPR000225 GO:0005515
Lal14g1569 529 Pfam Armadillo/beta-catenin-like repeat 242 269 IPR000225 GO:0005515
Lal14g1569 529 Pfam Armadillo/beta-catenin-like repeat 104 144 IPR000225 GO:0005515
Lal14g1569 529 Pfam Armadillo/beta-catenin-like repeat 146 185 IPR000225 GO:0005515
Lal14g1569 529 Pfam Armadillo/beta-catenin-like repeat 188 229 IPR000225 GO:0005515
Lal14g1569 529 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Lal14g1569 529 Gene3D - 71 494 IPR011989 -
Lal14g1569 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 325 368 IPR000225 GO:0005515
Lal14g1569 529 SMART arm_5 272 312 IPR000225 GO:0005515
Lal14g1569 529 SMART arm_5 314 355 IPR000225 GO:0005515
Lal14g1569 529 SMART arm_5 231 270 IPR000225 GO:0005515
Lal14g1569 529 SMART arm_5 187 229 IPR000225 GO:0005515
Lal14g1569 529 SMART arm_5 357 397 IPR000225 GO:0005515
Lal14g1569 529 SMART arm_5 400 440 IPR000225 GO:0005515
Lal14g1569 529 SMART arm_5 103 144 IPR000225 GO:0005515
Lal14g1569 529 SMART arm_5 146 186 IPR000225 GO:0005515
Lal14g1569 529 Pfam Atypical Arm repeat 455 502 IPR032413 -
Lal14g1569 529 PANTHER IMPORTIN SUBUNIT ALPHA 2 519 - -
Lal14g1569 529 SUPERFAMILY ARM repeat 5 499 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1569 Lal-Chr14 16293071 16297025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1569 129 389 U-box Gene Family AT3G46510 25.287 2.37e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1569 K15042 - gmx:100808498 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1569 14 16293071 16297025 Lal14g1569 14 16293071 16297025 ECH
Lal14g1569 14 16293071 16297025 Lal12g0581 12 4150303 4155549 ECH
Lal14g1569 14 16293071 16297025 Lal13g0626 13 4064269 4069968 ECH
Lal14g1569 14 16293071 16297025 Lal24g0493 24 3468276 3474409 ECH
Lal14g1569 14 16293071 16297025 Lal7g0966 7 15967116 15971665 LSH