LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal14g1567	ATGTATCTTACCAACAGCAAAGGTTCCATGTCAAATTCCGGCGCCGATGGTATCTCCGACCAATTTCCGGCAGGTCTTCGAGTTCTTGTAGTGGATGATGATCCCACGTGCCTCATGATCCTTGAGAGGATGCTGCGTACTTGTCTCTATCAAGTTACCAAATGTAACCGAGCTGAAATTGCACTGATGCTGTTAAGAGAGAATAAGAATGGTTTTGACATTGTTTTAAGCGATGTACATATGCCGGACATGGATGGATTTAAGCTTTTAGAGCACATTGGTTTGGAGATGGACCTTCCTGTTATTATGATGTCTGCAGATGATAGTAAAAATGTTGTTATGAAGGGTGTAACACATGGTGCCTGTGATTACCTCATTAAACCTGTTCGCATAGATTCTTTGAAGAACATATGGCAGCATGTTGTACGGAAGAGAAAGAATGAGTGGAAAGATACCGAGCAATCGGGTAGTGCTGAAGAAGGAGATCGACAGCTAAAGGCATCTGATGATGCAGATTATTCATCCTCAGCAAATGAAGGCAGACAGAGAAATTCAAAGAAAAGGAGGGATGAGGACGAGGATACAGACGAGAGAGATGACACATCCGCCCTAAAGAAGCCACGAGTAGTTTGGTCAGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTGGATCAAATAGGAATAGACAAGGCTGTTCCAAAAAAAATTCTGGAATTGATGAACGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCATCTCCAGAAATACCGTCTGTATCTTCGAAGGCTAAGTGGAGTTTCTCAGCACCCGAATAACTCTTTCCTCAGCCAACAAGATGCAACTTTTGGGTCAATATCTTCAATTAATGATCTTCAAACTCTTGCAGCTGCTGGACAGCTTCCTGCACAAAGTTTAGCCACACTTCAAGCAGCAGGACTTGGTAAATCAACTGCAAAAGCAGGCGTACCCATGCCTCTCATGGACCAAAGAAACCTTTTCAGCTTTGAAAACCCAAGGTTAAGATTTGGAGAAGGGCAACAACAACATTTGAACATCAGTAAATCAATAAACTTACTTCCTGGAATGCGTACCAACATGGAGCCAAAGCAGCTTGCCAATTTGCACCAATCTACCCAATCTATTAGCAACTTGAATATACGAGTCAATGCTTCTACTACACAGAGCAACCCCTTATTGATGCAGATAAAACAATCCCAACCTAAAGGTCAGATGTTAAATGAAAATACTGGTCTTGCTCCCAAACTTTCATCATCTTTTGGACAGCCTAATAGAAGTGGAATTTTTTATGGCCCTCTTGGTAAAAATGGCATTGCTACTAGTAATGTAGCATCTGCACAAAACTCTTTCATGATGAGTTTTCCTATGAATCAAACCCCTGAAATGTCCGTCAGTAGTTTCCCTCTTGGAAGCACTCCGGGTATATCTAGTGTCACAACAAAAGGCTCCTTTCAAGAGGAAGTTACTTCGGGAATTAAAGAAGACGGCGGATTTGTTCCAAGTTATGATATTTTTACTGAAATGCACCATCATAAGTCCCATGACTGGGAAATAACAAGCCCAGGCCTGACATATGCTGCCTCTCAGCCTGCAAATCCATTACAAGGTAATATAAATGTCTCACCGTCAATTTTAGTTCAACAGGGATTTTATCCTACCCAACAAACTGGACTAAATAAAGACACCCCTTTGATGGAAAAAGCCTTCTTCTCTCTAGGAGAAGGCTTGGAACAAAGTAATCTCCAAAATGCTGATCAGCACCTTAACACGCTTGTTGATAATTCAGTGAGGGTTAAGGTTGAAAGAATTCCTGATGAAAGCTCTCAAAGTAACCTCTTCCCTGAGCACTATGGGCAAGAGGATCTTCTGAGTGCACTTCTGAAACAGCAAGAAGGCGTTGGACCAGTAGAGAATGAGTATGATTTTGATGGATATTCTCTGGACAACATTCATGTCTAA	1980	0.4197	MYLTNSKGSMSNSGADGISDQFPAGLRVLVVDDDPTCLMILERMLRTCLYQVTKCNRAEIALMLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDSKNVVMKGVTHGACDYLIKPVRIDSLKNIWQHVVRKRKNEWKDTEQSGSAEEGDRQLKASDDADYSSSANEGRQRNSKKRRDEDEDTDERDDTSALKKPRVVWSVELHQQFVAAVDQIGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHPNNSFLSQQDATFGSISSINDLQTLAAAGQLPAQSLATLQAAGLGKSTAKAGVPMPLMDQRNLFSFENPRLRFGEGQQQHLNISKSINLLPGMRTNMEPKQLANLHQSTQSISNLNIRVNASTTQSNPLLMQIKQSQPKGQMLNENTGLAPKLSSSFGQPNRSGIFYGPLGKNGIATSNVASAQNSFMMSFPMNQTPEMSVSSFPLGSTPGISSVTTKGSFQEEVTSGIKEDGGFVPSYDIFTEMHHHKSHDWEITSPGLTYAASQPANPLQGNINVSPSILVQQGFYPTQQTGLNKDTPLMEKAFFSLGEGLEQSNLQNADQHLNTLVDNSVRVKVERIPDESSQSNLFPEHYGQEDLLSALLKQQEGVGPVENEYDFDGYSLDNIHV	659

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal14g1567	659	MobiDBLite	consensus disorder prediction	148	169	-	-
Lal14g1567	659	SUPERFAMILY	Homeodomain-like	204	263	IPR009057	-
Lal14g1567	659	Gene3D	-	203	265	-	-
Lal14g1567	659	SMART	REC_2	26	138	IPR001789	GO:0000160
Lal14g1567	659	CDD	REC_typeB_ARR-like	28	142	-	-
Lal14g1567	659	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	206	259	IPR006447	GO:0003677
Lal14g1567	659	PANTHER	TWO-COMPONENT RESPONSE REGULATOR	10	632	-	-
Lal14g1567	659	PIRSF	RR_ARR_type-B	4	651	IPR017053	GO:0003677\|GO:0003700\|GO:0009736
Lal14g1567	659	Pfam	Myb-like DNA-binding domain	208	258	IPR001005	-
Lal14g1567	659	MobiDBLite	consensus disorder prediction	181	203	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal14g1567	Lal-Chr14	16283864	16288058	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal14g1567	60	659	Response Regulator Gene Family	AT3G16857	48.466	4.37e-167	490

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-ARR-B	Lal14g1567		Response_reg	2.2e-22	CL0304

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal14g1567	-		K14491	gmx:100814930	1017.3

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal14g1567	14	16283864	16288058	Lal14g1567	14	16283864	16288058	ECH
	Lal14g1567	14	16283864	16288058	Lal19g1122	19	14808109	14811127	LSH

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