Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1485 ATGGTTTTGTCATTAAAATCCTTTTTACTTGTGTTCATTACTTCATTTCACTTCTGTCCCTTATCCTCAACTCTGTCTTGTCACATTGTTTTGTTCTTCTTCCTTCTCTCTATGTCTATCACAACCATGTCTCTGTTCAAATGTCTCACAATGGCAGAATCATCTCTTCTCTCTCCTCCTTCTCTATCCAAACCAAATTACCCATTTCTCCCAAATCATTCTAACCACATCAAGCTTCAATTTTCATGCTCTCACTCTTCACTCTCTCGTTATCTCAGCATCAGGAAAACTAACAATTCCCCTGTGCTCACTTTTGTAGCCCAAACTTCAGATTGGGCTCAAAAGGAAGAAGGTGAAGGTGAAGGTGAAGAAGCATTGTGGGAGAACCAAGGAGAACCCACTTGGGAAAATCAAGATGCTGATGTGGAATCAGGAGAAGGAGAGGGTTCTGAAGATGGGAACTTTGAGGTGAGGGAGGAACCATCTGATGATGCAAAAATCTATGTTGGGAATTTGCCATTTGATGTTGACAGTGAGAAATTGGCCATGCTTTTTGAGAAGGCTGGGACTGTGGAGATTGCAGAGGTCATTTATAATCGGGCAACTGACCAAAGTCGCGGCTTTGGATTTGTTACCATGAGTACAGCTGAAGAAGCTGAGAAGGCTGTGGAGAAGTTCAGTGGCTATGATTTTAATGGAAGACTCTTGACTGTTAATATTGCTGCTCCAAGAGGAGCAAGGCCCGAGCGCCCACCACGTGCCTTTGATAATACCTTAAGAGTCTATGTTGGCAACTTGCCATGGAATGTTGACAATGCTCGGCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGAATGCTCGGGTAGTATACGACAGAGAGACCGGTCGATCACGTGGTTTTGGCTTTGTCACTTTTTCCAGTGAGGCTGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGCTTGGACGGGAGGGCAATCAGAGTGAATGTTGCCGAGGATAGGCCCAGGCGTAGCTCCTTTTGA 1035 0.4435 MVLSLKSFLLVFITSFHFCPLSSTLSCHIVLFFFLLSMSITTMSLFKCLTMAESSLLSPPSLSKPNYPFLPNHSNHIKLQFSCSHSSLSRYLSIRKTNNSPVLTFVAQTSDWAQKEEGEGEGEEALWENQGEPTWENQDADVESGEGEGSEDGNFEVREEPSDDAKIYVGNLPFDVDSEKLAMLFEKAGTVEIAEVIYNRATDQSRGFGFVTMSTAEEAEKAVEKFSGYDFNGRLLTVNIAAPRGARPERPPRAFDNTLRVYVGNLPWNVDNARLEQIFSEHGKVENARVVYDRETGRSRGFGFVTFSSEAEMNDAIAALDGQSLDGRAIRVNVAEDRPRRSSF 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1485 344 SUPERFAMILY RNA-binding domain, RBD 251 342 IPR035979 GO:0003676
Lal14g1485 344 SMART rrm1_1 166 239 IPR000504 GO:0003723
Lal14g1485 344 SMART rrm1_1 260 333 IPR000504 GO:0003723
Lal14g1485 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 337 IPR000504 GO:0003723
Lal14g1485 344 MobiDBLite consensus disorder prediction 113 162 - -
Lal14g1485 344 CDD RRM_HP0827_like 166 243 - -
Lal14g1485 344 CDD RRM_HP0827_like 260 336 - -
Lal14g1485 344 PANTHER RIBONUCLEOPROTEIN 38 344 - -
Lal14g1485 344 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Lal14g1485 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 236 IPR000504 GO:0003723
Lal14g1485 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 331 IPR000504 GO:0003723
Lal14g1485 344 SUPERFAMILY RNA-binding domain, RBD 159 253 IPR035979 GO:0003676
Lal14g1485 344 Gene3D - 106 248 IPR012677 -
Lal14g1485 344 Gene3D - 249 343 IPR012677 -
Lal14g1485 344 PANTHER OS02G0815200 PROTEIN 38 344 - -
Lal14g1485 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 243 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1485 Lal-Chr14 15829057 15832226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1485 163 341 Eukaryotic Initiation Factors Gene Family AT3G16380 36.649 9.12e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1485 - - gmx:100811487 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1485 14 15829057 15832226 Lal14g1485 14 15829057 15832226 ECH
Lal14g1485 14 15829057 15832226 Lal19g1047 19 14254709 14257874 LSH
Lal14g1485 14 15829057 15832226 Lal21g0756 21 6243998 6247209 PCT
Lal21g0756 21 6243998 6247209 Lal14g1485 14 15829057 15832226 PCT