Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1480 ATGACTACTTCACTCTCTTTGTTATTCTTCCTCTTCTCTCTCCTCACCCTAACCACACTCATTTCCTCTTCCCCACTTCAGGACCCTGATTTGGTGGCACAAGAAGTGAACAGGAAAATCAATGGCTCTATGGGTAGGAGGAACTTGGGGTATCTCTCATGTGGGACAGGAAACCCCATTGATGATTGTTGGAGGTGTGACCCTAACTGGGAAAATAACAGGCAAAGGCTAGCAGATTGTGCAATTGGGTTTGGTAAAAATGCAATAGGTGGAAGGGATGGTAAGATTTATGTGGTCACTGACTCAGGTGATGATGACCCAGTGACCCCAAAGCCAGGGACACTTCGTTATGCTGTGATTCAAGATGAGCCATTGTGGATCATATTTGAAAGGGACATGGTGATTAAACTAAAGGAAGAGCTCATAATGAACTCATTCAAGACAATTGATGGAAGAGGTGCTAGTGTTCATATTGCTGGTGGTCCATGCATTACTATACAATATGTAACAAATGTTATAGTCCATGGGATTAATATACATGATTGTAAGCAAGGTGGAAATGCTATGGTAAGGGACTCCCCACAGCACTATGGGTGGAGGACCATATCGGATGGTGATGGTGTGTCTATCTTTGGAGGAAGTCACATATGGGTAGATCATTGTTCTTTGTCTAATTGCAATGATGGGTTAATTGATGCTATTCGTGGATCCACAGCTATTACAATATCCAACAATTACATGACACACCATGACAAGGTTATGTTATTGGGTCACAGTGACACATATACTCAAGACAAAAACATGCAGGTCACAATAGCTTTCAATCACTTTGGAGAAGGTCTTGTTCAAAGGATGCCAAGGTGTAGGCATGGATATTTCCATGTGGTGAACAATGACTATACCCACTGGGAAATGTATGCCATTGGAGGAAGTGCTAATCCAACCATCAATAGCCAAGGGAATAGGTTTGTTGCACCCAATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAATGAATGGAAAGAATGGAATTGGAGGTCAGAAGGGGATTTGCTAGTAAATGGTGCATTTTTTACACCATCAGGTGCTGAAGCTTCATCTATCTATGCAAGGGCTTCAAGCTTAAGTGCAAGGCCATCTTCTCTTGTGGGGTCTATAACAACTGCTGCTGGTGCACTTAGCTGTAAGAAAGGTTCTCGTTGCTGA 1221 0.4283 MTTSLSLLFFLFSLLTLTTLISSSPLQDPDLVAQEVNRKINGSMGRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAIGFGKNAIGGRDGKIYVVTDSGDDDPVTPKPGTLRYAVIQDEPLWIIFERDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIVHGINIHDCKQGGNAMVRDSPQHYGWRTISDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIRGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPENEWKEWNWRSEGDLLVNGAFFTPSGAEASSIYARASSLSARPSSLVGSITTAAGALSCKKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1480 406 SMART amb_all 132 329 IPR002022 -
Lal14g1480 406 PANTHER PECTATE LYASE 3 403 - -
Lal14g1480 406 Pfam Pectate lyase 139 323 IPR002022 -
Lal14g1480 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Lal14g1480 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Lal14g1480 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Lal14g1480 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Lal14g1480 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Lal14g1480 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Lal14g1480 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Lal14g1480 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Lal14g1480 406 SUPERFAMILY Pectin lyase-like 35 400 IPR011050 -
Lal14g1480 406 Gene3D - 57 399 IPR012334 -
Lal14g1480 406 PANTHER PECTATE LYASE 18-RELATED 3 403 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1480 Lal-Chr14 15806079 15808500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1480 2 406 Polysaccharide Lyase AT5G63180 80.098 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1480 K01728 - gmx:100101868 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1480 14 15806079 15808500 Lal14g1480 14 15806079 15808500 ECH
Lal14g1480 14 15806079 15808500 Lal19g1040 19 14219175 14221662 LSH
Lal14g1480 14 15806079 15808500 Lal4g0750 4 6283401 6287404 PCT
Lal4g0750 4 6283401 6287404 Lal14g1480 14 15806079 15808500 PCT