Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1467 ATGATGAGAGAAAGAGAGGCTCTGGTGGCATGTAGTGACAAGAGCATGAAAGTTGGTGTGAATGTTTGGGACATTAACACTGGAAACAACTTTCTTCACATACCATCTTGTGCTTCACCACCTTTCGGTTTATTGTGCTTAAGAAACCGATACATCGTGGCATCTCAATTGAACAGACATGGGTCTGTTGGTGGCGGTTCCATTGTTATTTGGCCCTTGAACAAGCCTCTAAAACCTCTTGTGAATTACACAATGGAGGCCATTGGGCCACTTTCTTGCACAAAAGATGGCCTTTATCTTGTGGGAGGAGGATTGTCTGGAAATGTTTATATCTGGGATGTGAGCAGTGGAAAATTGTTGAAGTCTTGGACAGCTCATAATAAATCCCTGAACTGCATGCTGTTTTCAGATGACAATTCACTTCTTATTTCTGCTTCAGATGATGGGACGATATGTGTTTGGTCCATGATTAGTCTTTTAGACGTAGAAGAATCGAGAAGCTTGCCTTGTCTGTTGCACTGTTTGTTAGGGCATATGTCCACTATAACGGGTCTTTTAACCTTACATGGAAGTTGCTCTTCAGTTTTAGTATCAAGCTCTCTTGATGGTACATGCAAGGTTTGGGACATTATCTCAGGAAAGCTTATGCAATCTCAAGTTTATTCATTACCTATAACTTCCATTGCCCTTGACCACGGAAATGAGTTCTTGTTTTATGGAATTGTAAATGGAAAAATAATTGTCAACAAGCTAAACATTGGTCTTGAAGAAGGTCCTACCACATTTGGCCAAACATTTGAATTGAAAGGACATAGTGGACCTATTACTGCCTTAACCTCCAGTCAGGCTGGCCTAATATCTGGCTCTGAAGATTGCACAATCTGCATCTGGGATGTCATCAATAGGACAATTATTCGAAGGTTCAATCTTCAGAAAGGGAAAGTGACTAATCTGGTGGTAGTTATGCGGTCATCGATGCTCTCTAGATCTAAATCAAATCATAAGAAAGTTTCCAATCAGTATATTGTTTCTCCACTTGATAAGTGTTCCGAGCCATATAATTCAATGAAGGGAGCAACGACTCTCGTTTCATTATGTGGCCTCTATAAAGAAAACCAGTCTTCTATTGATTTACGAAGGGCAGAAAGCAGAAATGTCTATGGCAATGACCACACAGATGAAAGTGGAAACAAATATAGAGCAGCAACCGAGGTAGATCACAACACTGAACCACATCACTTGTACCTTGTGGCTGCAACGAAAAACAATGGCACAGTTGAAAACAATTCCTTCATTGTATTTGTACCCTGCCACTTTTCCTTCCGTACACAGAAAAGAGCAGCTTCTGCATCGGCAGTTCTGGAAGGCAAATCCATCATCATTCAAAGAGTTATAAAAGCAGTGGTACGCAGTGATGCAGAGATAGAAATCTCTGAATCCAAGAAGGGTGGCGGGCTACGTGGAAAGTTAAATAAGGTTGTCCTGGCTTACAGTGGTGGCTTAGACACATCTGTCATCGTCCCATGGCTGAGGGAGAATTATGGTTGTGATGTCGTTTGCTTCACAGCTGATGTTGGCCAAGGTATAAAAGAACTGGATGGTTTAGAAGCCAAAGCCAAAGCTAGTGGGGCCTCTCAGTTAGTGGTAAAGGACTTGAGGGAGGAATTTGTTAAAGATTATATATTTCCTTGCCTGCGTGCTGGTGCAGTTTATGAGAGGAAGTATTTGCTCGGCACTTCAATGGCTCGCCCTGTTATTGCAAAGGCCATGGTTGATGTTGCCAAAGAAGTTGGAGCTGATGCTGTTTCCCATGGGTGTACAGGGAAGGGAAATGATCAGGCATGGCGAGAAGATGCTATTGAGTATGCTAAAAAGCATAATGTACCCGTTCCTGTAACAAAGAAATCCATATATAGCAGGGATAGGAACCTCTGGCACCTTAGTCACGAGGGTGACATTCTTGAAGACCCAGCTAATGAGCCTAAAAAGGATATGTTCATGATGTCTGTTGACCCAGAGGATGCTCCAAATCAAGCAGAATATGTGGAAATTGGGATAGAGTTGGGACTTCCAGTTTCAGTGAACGGGAAGAGGCTTTCACCAGCATCTTTACTTGCTGAGCTTAATGAAGTTGGTGGAAGGCATGGAATTGGCCGAATTGACATGGTTGAGAATCGGCTTGTAGGTATGAAGAGCCGTGGAGTTTATGAAACTCCTGGTGGAACCATCCTATTTGCTGCAGTACGTGAACTGGAGTCTTTGACACTTGATCGAGAAACGATTCAAGTCAAAGATTCATTAGCCCTTAAGTATGCGGAGTTAGTGTATGCTGGCAGATGGTTCGATCCACTTCGCGAGTCCATGGATGCCTTTATGCAGAAGATCACAGAAACAACAACTGGTTCTGTGACTTTGAAATTGTACAAAGGTTCAGTTACCGTAACTGGTCGGACCAGCCCCTTTAGCCTGTATAGGCAAGACATCTCATCATTTGAGAGTGGACAGATATATGATCAAGCTGATGCTGCTGGGTTTATCCGGCTTTATGGTCTTCCGATGAGGGTCCGAGCAATGCTTGAGCAGGGCATCTAG 2592 0.4298 MMREREALVACSDKSMKVGVNVWDINTGNNFLHIPSCASPPFGLLCLRNRYIVASQLNRHGSVGGGSIVIWPLNKPLKPLVNYTMEAIGPLSCTKDGLYLVGGGLSGNVYIWDVSSGKLLKSWTAHNKSLNCMLFSDDNSLLISASDDGTICVWSMISLLDVEESRSLPCLLHCLLGHMSTITGLLTLHGSCSSVLVSSSLDGTCKVWDIISGKLMQSQVYSLPITSIALDHGNEFLFYGIVNGKIIVNKLNIGLEEGPTTFGQTFELKGHSGPITALTSSQAGLISGSEDCTICIWDVINRTIIRRFNLQKGKVTNLVVVMRSSMLSRSKSNHKKVSNQYIVSPLDKCSEPYNSMKGATTLVSLCGLYKENQSSIDLRRAESRNVYGNDHTDESGNKYRAATEVDHNTEPHHLYLVAATKNNGTVENNSFIVFVPCHFSFRTQKRAASASAVLEGKSIIIQRVIKAVVRSDAEIEISESKKGGGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCDVVCFTADVGQGIKELDGLEAKAKASGASQLVVKDLREEFVKDYIFPCLRAGAVYERKYLLGTSMARPVIAKAMVDVAKEVGADAVSHGCTGKGNDQAWREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKKDMFMMSVDPEDAPNQAEYVEIGIELGLPVSVNGKRLSPASLLAELNEVGGRHGIGRIDMVENRLVGMKSRGVYETPGGTILFAAVRELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRESMDAFMQKITETTTGSVTLKLYKGSVTVTGRTSPFSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRAMLEQGI 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1467 863 Gene3D Argininosuccinate synthetase, chain A, domain 2 639 862 IPR024074 GO:0004055
Lal14g1467 863 PRINTS G protein beta WD-40 repeat signature 142 156 IPR020472 -
Lal14g1467 863 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Lal14g1467 863 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Lal14g1467 863 SUPERFAMILY Argininosuccinate synthetase, C-terminal domain 635 861 IPR024074 GO:0004055
Lal14g1467 863 TIGRFAM argG: argininosuccinate synthase 615 856 IPR001518 GO:0004055|GO:0005524|GO:0006526
Lal14g1467 863 SMART WD40_4 116 155 IPR001680 GO:0005515
Lal14g1467 863 SMART WD40_4 168 209 IPR001680 GO:0005515
Lal14g1467 863 SMART WD40_4 212 250 IPR001680 GO:0005515
Lal14g1467 863 SMART WD40_4 78 113 IPR001680 GO:0005515
Lal14g1467 863 SMART WD40_4 261 298 IPR001680 GO:0005515
Lal14g1467 863 ProSiteProfiles Trp-Asp (WD) repeats profile. 96 122 IPR001680 GO:0005515
Lal14g1467 863 Pfam Arginosuccinate synthase 494 613 IPR001518 GO:0004055|GO:0005524|GO:0006526
Lal14g1467 863 Pfam Arginosuccinate synthase 616 855 IPR001518 GO:0004055|GO:0005524|GO:0006526
Lal14g1467 863 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 299 - -
Lal14g1467 863 Hamap Argininosuccinate synthase [argG]. 490 861 IPR023434 GO:0004055
Lal14g1467 863 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 156 - -
Lal14g1467 863 Gene3D HUPs 487 638 IPR014729 -
Lal14g1467 863 ProSitePatterns Trp-Asp (WD) repeats signature. 285 299 IPR019775 -
Lal14g1467 863 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 307 IPR001680 GO:0005515
Lal14g1467 863 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 218 IPR001680 GO:0005515
Lal14g1467 863 ProSitePatterns Trp-Asp (WD) repeats signature. 196 210 IPR019775 -
Lal14g1467 863 Gene3D - 220 328 IPR015943 GO:0005515
Lal14g1467 863 Gene3D - 2 219 IPR015943 GO:0005515
Lal14g1467 863 ProSitePatterns Argininosuccinate synthase signature 1. 496 504 IPR018223 GO:0004055|GO:0005524|GO:0006526
Lal14g1467 863 SUPERFAMILY WD40 repeat-like 20 319 IPR036322 GO:0005515
Lal14g1467 863 CDD Argininosuccinate_Synthase 493 852 IPR023434 GO:0004055
Lal14g1467 863 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 156 IPR001680 GO:0005515
Lal14g1467 863 PANTHER ARGININOSUCCINATE SYNTHASE 489 613 IPR001518 GO:0004055|GO:0005524|GO:0006526
Lal14g1467 863 PANTHER ARGININOSUCCINATE SYNTHASE 616 861 IPR001518 GO:0004055|GO:0005524|GO:0006526
Lal14g1467 863 Pfam WD domain, G-beta repeat 171 209 IPR001680 GO:0005515
Lal14g1467 863 Pfam WD domain, G-beta repeat 117 155 IPR001680 GO:0005515
Lal14g1467 863 Pfam WD domain, G-beta repeat 266 298 IPR001680 GO:0005515
Lal14g1467 863 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 491 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1467 Lal-Chr14 15733523 15742750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1467 72 310 U-box Gene Family AT1G04510 26.639 3.21e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1467 K01940 - gmx:100816038 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1467 14 15733523 15742750 Lal14g1467 14 15733523 15742750 ECH