Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1451 ATGGACTGGAATTTGAAATCACCTTCTTTGGATTTGACTGAAGTGGATCAGGGATCAAATTTTCCCAACATTGAAACAATGGATGAAGGGTCAAGCAGGTTTGGAGTTTACAGAACAAAAGGGGAATTTTCTGTGGACTTGAAGCTTGGTCAGGTTGGGAATTTTGGCACAGAATCAATGTTGTCCAAGCCCAAAGATGCTGCTTCTGATACTGGACATTCAAAAATGGCATCATCCTTAGCTTCAGGGTCATCTAAGAGAGCTAGAGCCTTCAACAATGGGAATCACACAGTGACATGCCTTGTGGATGGGTGCAATTCAGATCTTAGTAATTGCAGGGACTATCATAGGCGCCACAAGGTGTGTGAACTTCATTCCAAGACTCCACAGGTCACTATTGCTGGCCAGAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAAGGAAAAAGAAGCTGCAGAAAACGCTTAGATGGACACAACAGAAGGAGAAGAAAGCCCCAACCAGAACCACTCACGCGTTCTAGTAGTTTTTTGTCCAATTACCAAGGCACCCAGTTGTTACCTTTCTCAAATTCACAAATATACTCTTCCACTACTATGGTGAATCCTGATTGGAGTGGAGGAGTTGTTACTTCATGTGCAGAAGTTAGACTCCACAGCCACCACCAACACCAACACCAACAACAACAACAACATCAAATGAATTTTATTGAGAAACAAGACCTTTTTCTTGGATCTTCTCCAACCAGCTACAAAGAAGGGAAACAACTGGCATACTTACAAGGTGACCACAATCCAACTGTCACACTCAACAACCAAAACACACATCATATTCAGACACTTCTTAGAACTAGTCCTTACTCAGAAAGCAGTGGAGGGGTGAGATGCAAAATGTTCTGTGATAATAGCCTAACAAGTTCTGTTCATGACTCTCCTTGTGCTCTCTCTCTTCTGTCATCACCACAGACACACAATAATTCTGGAAATGGATTGAACCAAATGGTGCAGCCTCACTCATCATCACTTATGCAACCCTTAGGCCTGACTCTGCATGATAATAATAGCTTGGAGTCTGTGGACCCAGTTTTGGATCCTAGTGGGAGTGACCATTGTTCATCAATGTATAACATTGGCTCTAATGGATCCCAGGGGAGTGATGTTCCTCAACTATTTCCCTTTCAATGGGAATAG 1215 0.4296 MDWNLKSPSLDLTEVDQGSNFPNIETMDEGSSRFGVYRTKGEFSVDLKLGQVGNFGTESMLSKPKDAASDTGHSKMASSLASGSSKRARAFNNGNHTVTCLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIAGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSSSFLSNYQGTQLLPFSNSQIYSSTTMVNPDWSGGVVTSCAEVRLHSHHQHQHQQQQQHQMNFIEKQDLFLGSSPTSYKEGKQLAYLQGDHNPTVTLNNQNTHHIQTLLRTSPYSESSGGVRCKMFCDNSLTSSVHDSPCALSLLSSPQTHNNSGNGLNQMVQPHSSSLMQPLGLTLHDNNSLESVDPVLDPSGSDHCSSMYNIGSNGSQGSDVPQLFPFQWE 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1451 404 Pfam SBP domain 100 173 IPR004333 GO:0003677
Lal14g1451 404 Gene3D - 91 161 IPR036893 GO:0003677|GO:0005634
Lal14g1451 404 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 6 404 IPR044817 GO:0003677
Lal14g1451 404 ProSiteProfiles Zinc finger SBP-type profile. 97 174 IPR004333 GO:0003677
Lal14g1451 404 MobiDBLite consensus disorder prediction 58 83 - -
Lal14g1451 404 MobiDBLite consensus disorder prediction 163 184 - -
Lal14g1451 404 SUPERFAMILY SBT domain 98 179 IPR036893 GO:0003677|GO:0005634
Lal14g1451 404 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 6 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1451 Lal-Chr14 15646268 15650480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1451 1 404 SBP-box Gene Family AT5G50670 40.191 2.42e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal14g1451 SBP 7.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1451 - - gmx:100806507 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1451 14 15646268 15650480 Lal7g0874 7 15293022 15296263 LSH
Lal14g1451 14 15646268 15650480 Lal19g1022 19 14077846 14082071 LSH