Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1422 TTCTCTCTTTCTCTGTCACAATACTTTAACTGTTGCGTTGTTTTGTCTGTTCCCTCTCTCCTTAACCCCGGCGAGTTTTCTCCCTCGCCGATATTCCAGAGTCTGAGCTGCACGATGCCTTTTCAAGTAATGGATCAGAGGGGTGTTTCTGCCTCATCCCTCTTCTTTGATGACATTTCCTTTCATTCTGAGAGGAATGTTGGATTACATAAGCAAAAATCCATTCATGATCAATACCCACAAGGAAAGAACGGAATGGTGGCATCACCTGGCAGCATTTTTAGTGGTTCATCACCCCTTGGTAGAAATGCAAAATCTGGTTTACAATTGTCACAGACTAGTCTATCCAGAGAAAGTATGGAAAATCTACATTTTGGTGGAGAAGAAGGCATTGTTGATGTGTTGAAAGATTCCAAGGAATCATCATATTATCATCCCAGATCATGGTCTGATCCGTATATGCAGCCAGCACGTACCTCATATGGTTTAATTGGGAGCAAGATTGTCACCAACGCTGTCCCTTGTGAAATGAGGTTAATGGGGAAGGATGTTCTGTCTGATCAGCCCATTACTGTCGGTTCCCTTCCTCGGGAAGAGCCTTATAAATCTATTGAAGAAGACATTATAGGGAATATCCTTCCTGATGAAGATGATTTGTTTTCTGGTGTCACTGGTGAGTTAGGATACAGCACTCATGGCAGAACAAATGATGACTTTGAAGATTTTGATTTGTTTAGCAGTGGTGGGGGCATGGAGCTGGAAGGAGGTGAACATCTAAATTCAGGAAAGAGAACAAGTGGCCTGGACGGAAATTCTGTTTTCTATGGAGGTTCTAAAGGAAAACTTCCTCTTGGTGAACAACCTTCTCGAACACTTTTTGTGCGAAACATTAATAGCAATGTAGAAGATTCTGAGCTAAAGTCTCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCTGTAAGCATCGCGGTTTTGTTATGATTTCTTATTATGACCTAAGAGCAGCACAAAATGCAATGCAAGCACTTCAGAACAGGCCATTGAGGTCAAGGAAACTTGATATACATTATTCAATTCCAAAGGCCAATGCTCCCGAGAAGGATATTGGCCACGGTACGCTGATGCTATCTGGTCTTGATTCATCTGCTTTAAATGATGATCTTAAGCGGATTTTTGGCTTTTATGGGGAAATTAAAGAAATATACGAATATCCAGACATGAATCATCACAAATTTATAGAGTTTTATGATGTGCGAGCTGCAGAAGCAGCTCTTCATGCACTGAACAGGATTGGCATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTCTGATGCAGCAGTCTCATAAGGGGCAAGAAGAACCAGGTCTTGGTCAAAGTATTACTGACAACTTATCATTAACACAGAAGGCAAAAGTGTCTTATGGAGCACTTGGATCTGGCTGCTTGGGAAATGGATATAATCAGGGATTTCAATCTGAAATGCGGCAACCTTTGAATGCATTTGCTGATAATGCATTTTTTCAAGCGAACTCTAGCATTCACAACACAGTGGGAGGGGCATCTGGTGCAAAAGTGTCTGGTGTTCGTGAGTCCAGTAACATTGCTGATGCAATGAAATTTGCATCTAGTCCGCGATTTCTTCCTCATTCATTACCTGAGTATCTTGGTAGTTTACCTAACGGTAGTCCTTATAACTTTTCAAGCACCATTAGCAACATGGCTAGCAATATTGGTACTGCAGCAACAGAAGCCTCTGACGGCAGGCACATCCAGGGAATGGCCTCAACTAGGAAGGAAATGGAATCCCTCCAAATAATGGGCTTTATGATATGTGGAACAACTCCAGCTTGCATCAGCAACCTTCATCAGAAAACACCACCATTTGTTAATGGTACGGGCCTTCCACATATGCCAGGCTTTGCCAAAACATCGCCTCAGATGCTGAGAACACAACATATAGACCATCACGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGAAAAGGCAACATTCTTTCTTGGGAGAGTCCCCTGAAGCTTCTGGTTTTCACTTGGGTTCTTTAGGAAGTGGAGGTTTTCATGGTTCCTGGCAATTGCATTCACCAGATTTATCTTCTCACATGTTTTCTCATGTTGGAGGGAATAATACCGAACTGGTGTCAAATGTTGCGCATAGCTCTCCTAAGAAATTGTCACATGTTTTCCCAGGAAATCCTACTTCATTGTCAAAATTTGATTCTACCAATGAGCAGATGAGAAATATTTATCATCATAGAAGTGAAGCAAACACTAACAATGCTGATAAAAAACAATATGAACTCGACCTAGGTAGCATACTGCGCGGGAAAGACAGCCGAACAACGCTTATGATAAAAAACATTCCCAACAAGTATACTTCAAAGATGCTTCTTAACAAATGTAATGTTGGCTATGCATTCATAAATATGATCGATCCTGCTCAAATTATTCCTTTTTACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCCTCACTTACGTATGCTCGAATTCAAGGAAAAGCTTCTCTTATTGCTCATTTCCAGAACTCAAGCTTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCATACAGATGGACCAAATGCTGGTGATATGGAGCCTTTCCCTGTAGGTGCCAATATTAGAGTGAGACCTAGAAAATCGCGCACCGGAAGTAATAATGAGGATAACCGCAGCCAAGGAAGTTCTTCAACTTTAGCAAGTGGAGAAGAGGTTCATGGGGACTTTGCTGATTTTGTTTTCATTCTTGTCTTGTTCTGTTACTCCACTACAGATTTTGTCATGTCTGTTGCAATCAGTTTTCTGAGGCTTGAATCTATTTGCTTGCAACTATGCTTACCTTAA 2934 0.4155 FSLSLSQYFNCCVVLSVPSLLNPGEFSPSPIFQSLSCTMPFQVMDQRGVSASSLFFDDISFHSERNVGLHKQKSIHDQYPQGKNGMVASPGSIFSGSSPLGRNAKSGLQLSQTSLSRESMENLHFGGEEGIVDVLKDSKESSYYHPRSWSDPYMQPARTSYGLIGSKIVTNAVPCEMRLMGKDVLSDQPITVGSLPREEPYKSIEEDIIGNILPDEDDLFSGVTGELGYSTHGRTNDDFEDFDLFSSGGGMELEGGEHLNSGKRTSGLDGNSVFYGGSKGKLPLGEQPSRTLFVRNINSNVEDSELKSLFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMQALQNRPLRSRKLDIHYSIPKANAPEKDIGHGTLMLSGLDSSALNDDLKRIFGFYGEIKEIYEYPDMNHHKFIEFYDVRAAEAALHALNRIGIAGKQIKLEPGHPSLMQQSHKGQEEPGLGQSITDNLSLTQKAKVSYGALGSGCLGNGYNQGFQSEMRQPLNAFADNAFFQANSSIHNTVGGASGAKVSGVRESSNIADAMKFASSPRFLPHSLPEYLGSLPNGSPYNFSSTISNMASNIGTAATEASDGRHIQGMASTRKEMESLQIMGFMICGTTPACISNLHQKTPPFVNGTGLPHMPGFAKTSPQMLRTQHIDHHVGSAPVVTASPWKRQHSFLGESPEASGFHLGSLGSGGFHGSWQLHSPDLSSHMFSHVGGNNTELVSNVAHSSPKKLSHVFPGNPTSLSKFDSTNEQMRNIYHHRSEANTNNADKKQYELDLGSILRGKDSRTTLMIKNIPNKYTSKMLLNKCNVGYAFINMIDPAQIIPFYQAFNGKKWEKFNSEKVASLTYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDMEPFPVGANIRVRPRKSRTGSNNEDNRSQGSSSTLASGEEVHGDFADFVFILVLFCYSTTDFVMSVAISFLRLESICLQLCLP 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1422 977 SUPERFAMILY RNA-binding domain, RBD 287 446 IPR035979 GO:0003676
Lal14g1422 977 SMART rrm1_1 291 359 IPR000504 GO:0003723
Lal14g1422 977 SMART rrm1_1 376 444 IPR000504 GO:0003723
Lal14g1422 977 Pfam RNA recognition motif 2 812 869 IPR007201 -
Lal14g1422 977 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 377 442 IPR000504 GO:0003723
Lal14g1422 977 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 356 IPR000504 GO:0003723
Lal14g1422 977 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 375 448 IPR000504 GO:0003723
Lal14g1422 977 CDD RRM1_MEI2_like 289 364 IPR034453 -
Lal14g1422 977 Gene3D - 283 373 IPR012677 -
Lal14g1422 977 SUPERFAMILY RNA-binding domain, RBD 796 860 IPR035979 GO:0003676
Lal14g1422 977 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 363 IPR000504 GO:0003723
Lal14g1422 977 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 40 938 - -
Lal14g1422 977 PANTHER RNA RECOGNITION MOTIF-CONTAINING 40 938 - -
Lal14g1422 977 Gene3D - 374 464 IPR012677 -
Lal14g1422 977 MobiDBLite consensus disorder prediction 906 930 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1422 Lal-Chr14 15459404 15467516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1422 284 469 Eukaryotic Initiation Factors Gene Family AT1G71770 25.128 1.73e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1422 - - gmx:100797893 1229.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1422 14 15459404 15467516 Lal17g0813 17 5949438 5958082 ECH
Lal14g1422 14 15459404 15467516 Lal14g1422 14 15459404 15467516 ECH
Lal14g1422 14 15459404 15467516 Lal7g0852 7 15080848 15088933 LSH
Lal14g1422 14 15459404 15467516 Lal17g0813 17 5949438 5958082 PCT
Lal14g1422 14 15459404 15467516 Lal4g0683 4 5343667 5351907 PCT
Lal17g0813 17 5949438 5958082 Lal14g1422 14 15459404 15467516 PCT
Lal4g0683 4 5343667 5351907 Lal14g1422 14 15459404 15467516 PCT