Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1401 ATGGCTTCTCCTCCATTACCGATAGCATATACAGCATGGACGAGTCTAGCAGTACCAGATTGGTTAAACAAAGGAGACAACACATGGCAAATGGTTGCAGCAACCTTAGTAGGAATTCAAAGCATGCCAGGCCTTGTTATTCTCTATGGCAGCATAGTCAAGAAAAAATGGGCTGTTAATTCTGCTTTCATGGCTCTATATGCTTTTGCAGCAGTTATCCTTTGTTGGGTTACATGGGGTTATAAAATGAGCTTTGGTGAGAAACTCTTACCCTTTTGGGGAAAAGCTGGACCCGCTTTGGGACAAAGTTTTCTGATTAAACAAGCAGCGTTACCAGCTACACCACATTATTATAAGAATGGAATGTTGGAAACTGCTGAGATCGAACCTTATTATCCTATGGCTACTATGGTTTGGTTTCAGGGTGTGTTTGCTGCTATTGCTCTTGTTATTTTGGCTGGATCTGTGTTGGCTAGGATGAGTTTTAAGGCTTGGATGTTGTTTGTGCCTCTTTGGCTCACTTTTTCTTATACCATTGGTGCTTTTAGCTTGTGGGGTGGTGGCTTTTTGTTTCATTGGGGTGTTATGGATTACTCTGGTGGTTATGTCATTCATGTTTCTTCTGGCTTCGCTGGTTTCACTGCAGCTTATTGGGTGGGGCCAAGATCAAAGAAAGACAGAGAAAGATTCCCACCAAACAATGTATTACTAACCTTGGCAGGGGCAGGATTACTATGGATGGGATGGGCAGGTTTCAACGGAGGAGATCCTTACTCCGCCAACACCGACTCCTCCATGGCGGTGCTTAACACCAACATCTGCGCTGCCACCAGTCTCCTCGTGTGGACGTGGCTTGACGTTATCTTCTTCAAGAAACCTTCCGTTATTGGAGCCGTTCAGGGCATGATCACTGGCCTTGTTTGCATCACTCCCGCCGCTGGTCTTGTTCAAGGATGGGCTGCAATAGTAATGGGAATTCTATCAGGAAGTGTGCCATGGTTCACAATGATGATATTAGGGAAGAAGATCAAATTGTTCCAAATTGTTGATGACACCTTAGCTGTGTTCCACACTCATGCAGTGGCTGGGTTTCTAGGAGGCATACTCACTGGCCTATTCGCTGAGCCACGTCTAAGTGCACTTTTTCTACCAGTCACAAATTCAAGAGGAGCCATATATGGAGGCTCTGGTGGAGTACAAATACTTAAACAAATTGTGGGGGGTTTATTCATAGCTGGATGGAACATTGTAGTCACTTCAATTATTTGTTTTGTTATAAGTTTGATTGTTCCGCTGAGAATGACTGAGGAGGAGCTTTTGATTGGTGATGATGCTGTGCATGGGGAAGAAGCTTATGCTTTGTGGGGAGATGGAGAGAAACTTAGCATCTATAAAGATGATACAACACACCATGGTGTGATGTCAAGTGGTAGTGCCACTCAAGTGGTATAG 1452 0.4428 MASPPLPIAYTAWTSLAVPDWLNKGDNTWQMVAATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVILCWVTWGYKMSFGEKLLPFWGKAGPALGQSFLIKQAALPATPHYYKNGMLETAEIEPYYPMATMVWFQGVFAAIALVILAGSVLARMSFKAWMLFVPLWLTFSYTIGAFSLWGGGFLFHWGVMDYSGGYVIHVSSGFAGFTAAYWVGPRSKKDRERFPPNNVLLTLAGAGLLWMGWAGFNGGDPYSANTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPAAGLVQGWAAIVMGILSGSVPWFTMMILGKKIKLFQIVDDTLAVFHTHAVAGFLGGILTGLFAEPRLSALFLPVTNSRGAIYGGSGGVQILKQIVGGLFIAGWNIVVTSIICFVISLIVPLRMTEEELLIGDDAVHGEEAYALWGDGEKLSIYKDDTTHHGVMSSGSATQVV 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1401 483 ProSitePatterns Ammonium transporters signature. 197 222 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lal14g1401 483 SUPERFAMILY Ammonium transporter 21 434 - -
Lal14g1401 483 PANTHER AMMONIUM TRANSPORTER MEP2 14 477 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lal14g1401 483 Gene3D Ammonium transporter AmtB like domains 9 455 IPR029020 -
Lal14g1401 483 PRINTS Rhesus blood group protein signature 141 157 IPR002229 GO:0005887
Lal14g1401 483 PRINTS Rhesus blood group protein signature 236 254 IPR002229 GO:0005887
Lal14g1401 483 PRINTS Rhesus blood group protein signature 267 289 IPR002229 GO:0005887
Lal14g1401 483 PRINTS Rhesus blood group protein signature 322 340 IPR002229 GO:0005887
Lal14g1401 483 Pfam Ammonium Transporter Family 29 452 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lal14g1401 483 PANTHER AMMONIUM TRANSPORTER 14 477 - -
Lal14g1401 483 TIGRFAM amt: ammonium transporter 26 452 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1401 Lal-Chr14 15308053 15313203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1401 134 471 Inorganic Solute Cotransporters AT2G38290 70.414 2.28e-165 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1401 K03320 - gmx:100785993 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1401 14 15308053 15313203 Lal14g1401 14 15308053 15313203 ECH