Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1377 ATGACCAAAGATCAAATGACAATTCCCCACTTATTCAGATGCCCCATCAGTTTAGACTTGTTTGAAGACCCTGTAACTTTACGCACAGGCCAAACCTATGACAGGTCAAGCATAGAAAAATGGTTTTCTGCTGGTAACCTCACATGCCCTGTAACAATGCAGAAGCTTCATGATCCATCCGTTGTTCCAAATAACACTCTTCGTCATTTGATCCATCAATGGCTACAATTTGGTCCACAATTTGACCCTGATAACTCTGCAACTATAACTATTGATTCTTTAGCTGCAATTAAAGTCACCCTTGAATCTCATGAGGAAGCCTTAGAGAACAAGCTACTGGCACTTGAGAAAATCAGAGTCTTGTTATCTGATGAAAATTGTTCTTTTGATAAATCGTGCTTCCTCCAATTGGAGTTAGCATTTTGCTGCATTCTAAAATTGCTGCCTCTTCGTAATTTGGAGCTTCTAAATATGACCAAGGGTAAGTCGAAATTAGCATCACTTCTGCTATTATTTGAAAAAGGCACTAGCTCGGTTAAGACTAGCTTGTGTCATCTTATAGAGTCAGCAGCAGCATCTCAGCAGACAGAAGAGTTATGCTGTATTCTTGGAAACAATCACAAGCTAGTGCATGAGATAGTTCTAATTATAATCCAAAATTGTGAGGTTACTGAGTATGCACTAAAAGCCATGTCAGCACTATGTTCCTTACAATGTAATAGAGAGACTTTAGTAAGAGAAGGAGCAGTAGATGGAATCATAACATACATTTCATCATTAGGATGTGAAAGAACACAGAAGAACTTAGCTCCACTAGCCATGTCAATAATGGAGAAACTTATGGTGCTAGATAGTGCTAAAGAGGCACTGGTGAATCATCCAAAAGGTATAGAAACTTTGGTGAATATGGTGTTCAGGGTATCTGATCAAGAATGTAGTCAGAGTGCTGTTGAGCTACTTTTGATTCTTTGTAGTGATTTTGAGTATGCAATAGAGGAATCCATAGGGGTTGGTGTTTTGAATCAGTTGCTATTGCTTCTGCAGAGTCAGTGTGACCCCATAACTAAATCAAAGTCAAGAATGCTGCTCAAATTGTTAAGATTCAAGTGCACTTAA 1116 0.3862 MTKDQMTIPHLFRCPISLDLFEDPVTLRTGQTYDRSSIEKWFSAGNLTCPVTMQKLHDPSVVPNNTLRHLIHQWLQFGPQFDPDNSATITIDSLAAIKVTLESHEEALENKLLALEKIRVLLSDENCSFDKSCFLQLELAFCCILKLLPLRNLELLNMTKGKSKLASLLLLFEKGTSSVKTSLCHLIESAAASQQTEELCCILGNNHKLVHEIVLIIIQNCEVTEYALKAMSALCSLQCNRETLVREGAVDGIITYISSLGCERTQKNLAPLAMSIMEKLMVLDSAKEALVNHPKGIETLVNMVFRVSDQECSQSAVELLLILCSDFEYAIEESIGVGVLNQLLLLLQSQCDPITKSKSRMLLKLLRFKCT 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1377 371 SUPERFAMILY RING/U-box 5 76 - -
Lal14g1377 371 Gene3D - 218 369 IPR011989 -
Lal14g1377 371 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Lal14g1377 371 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Lal14g1377 371 PANTHER WDSAM1 PROTEIN 6 367 IPR045185 GO:0061630
Lal14g1377 371 CDD RING-Ubox_PUB 12 54 IPR045210 -
Lal14g1377 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 78 IPR013083 -
Lal14g1377 371 PANTHER OS02G0542800 PROTEIN 6 367 - -
Lal14g1377 371 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Lal14g1377 371 SUPERFAMILY ARM repeat 171 356 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1377 Lal-Chr14 15159237 15160434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1377 8 351 U-box Gene Family AT3G19380 30.079 3.65e-37 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1377 - - gmx:100815247 458.759