LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal14g1373	ATGAGTGGAAATGGCACAAAGCGCTATTCAAAGTGGGATTTGAGAGATGAACCTGAATATGCACATGATAGTAAGCAAGTGTGGTCTGGGTGGTCCTATGCAGATATTGCTGGCAATAATAGTTCAAAGTCATCCTATATGGAAAGAAATGATAGGTTAAAACCCAGAATGGGATTTTCAAGTAAGGAACCTTTTTCTAGAGGCAGAGGTTCAAATAAGGATGATATTTTGAATAAAGACTACCGAGTCTCGGATGCAACTATTGCTGATGGAAGTCACAGCATGAAGATGTCTCCAGGGTTTGAGGAAAGGAAACACAAGAGACATAGTCAGTCCCCAAAAAATGGTCTCAGAAGGCCTGTCAGATCTTTGTCATGGTTGTGCGCGCATAATTTTCCAGATGCAGTTGGTGTTATTAATTGTCTACCTTTTTTGGATGATGCCATGTCTAGGAGTAGTCGGAGCAGGAGCCCTGCATGTGGTCTTAGGTTGGATTCAGGAGTCAATGGCAGAAATAGAACTGGAGCTGAAGGATTGACACAAACATGTAGAGCTTTTGCTTCCGGGGAATGCAGAAGAGGCAGCCAATGCCATTTCCTTCACCACAATGATCAAAATTATGAGGATAATGGGGAAATTAGACACAGGCAAGATGGAGACCCCAAATATTCTGCTCCCCACGAGAGTGGGGATTATTTCCTTAGGAGTGGAAGATCTAAGCAAGGTTGTATTAATTTTGCAAAAGGAGGGTGTAGAATGGGAGCATCATGCAAGTATGTGCATCATGCAAATTCTGATTGCTTCAGTAAAGTTTCTGTGGATGAATCACTTAGAGAAAGGGAAATTAGTAGGAGGTGCATAGAGAATTCCTTTGAGCAGGGCAGCAGGTATGCTGTAAACCACAGCGGTGATACGCCTTGCAAGTTTTTTTCATCTGGAAATTGTCGAAATGGTAAAATTTGTAGGTATTCTCATGACAGGCAAGCATGTATGAGCCCTAATAGAAGATTAAGGGATGATAATAGGTCAAGGAGTAATTATGGTGGAGATCAGATGTTGGATAGACCAAAAGTGAGTGATTCAGTTAGTCATAATGAAAAGCTAAGATATGATAGATGGAGTTCAGATGGCAATACGGCTGATGTAGATGAAGTTTGGGACCGTCCAAAACAGAATGATTTAGTTGCTGGCCCTGGTGCAGCAAAGCAGGTTGTAAACAATAAAAATGGAATTTTGGGTGCCCCAGAACTTGGACTCACTGCTCAACCATTGGGTGATGGATGGGACCATAGTTCAGATATGAACATGCTACATTGCGAATCACCATTTTCAAGTGATGAGAAAGAAACCAACTGTTTGACATCAGAAAATACTTTTGCCAACGTTCAGATTTCTCAGTCAATAGGTGCAGGCATTTGGCCTGGTGATGAGGAAATGTCTCCAGATTGGAAATATGGTGTGGGGTCTTCCAGACATCTTGAAGTAAAGCATGGGGAAAATAAGCCACAAGTTTATCCAGGGCAAGGAGTTAATCAGAATGCTCAGAATGTGAATTCTTCAAGCCGTCGTGTATTTGGTCAAAGTCAGCCGGAAATTTCCATTGTTCGTCCAAGTGTAGGAACTGTTGAAGGTATGCAGAACAAGGAAATATCTACTGATAAAAAGTACACCGTTGGTTCAGATATCATGGATGCAAGCATATCACAAGCTGGTTCAAGAAACCCTCCAACTCAGAACATTGTGAGTAATGAACAGCTTGCTCAACTTACCTGCCTCACAGCTTCTCTGGCACATTTCCTTGGAACAGGTCAGCAGCTCCCACAACTGTATGCTCCTTTAAATTCTCATGATGCAAAGGACACTTCCTTCCCTGGCAGAACAGAAGGGTCTGGTATGTCAGTGTCGACAACATTCATCAAGCCAGCTCCTGCTGTTGGATTCCAGAAGCAGTATGATCCAATTTGTGATAGCATTGAGACAAAGAATGCTAATGCATGGGAAGGTCCCCCAGGCTTTTCTCCAATTAAAAAAATCGCAGAAGATGCTGTAGAGATTCCACCACTGTTGTCTAACTCAGAGAGACATAATTTAATTCAGCTGCATCAAGGTGAAAACATTGAGGTTAATAAGGAGAGTAATGAAGTGGTAGATGAAGAAATGCAGATTTCTCCACGTGATAATAAAAGTACAAAAGAGAATGGTCCTTTGGAAAGCACGGACCAAAATGGTGGACATAATGAGGCCAAGAAAAAGGATATGAAGGGGATCCGAGCATTTAAATATTCATTGGTGGAGTTCATTAAGGAGCTTCTGAAACCGACATGGAAAGAAGGTCATATTACCAAAGAAGATTATAAAGCAATTGTGAAGAAAGTCTCTGATAAAGTAACTGGCACAGTGCAGCGGTTACACATTCCTCAGACACAAGAGAAAATTGACCACTATTTATCATCATCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGCTCAAAAAGCTTAG	2514	0.4153	MSGNGTKRYSKWDLRDEPEYAHDSKQVWSGWSYADIAGNNSSKSSYMERNDRLKPRMGFSSKEPFSRGRGSNKDDILNKDYRVSDATIADGSHSMKMSPGFEERKHKRHSQSPKNGLRRPVRSLSWLCAHNFPDAVGVINCLPFLDDAMSRSSRSRSPACGLRLDSGVNGRNRTGAEGLTQTCRAFASGECRRGSQCHFLHHNDQNYEDNGEIRHRQDGDPKYSAPHESGDYFLRSGRSKQGCINFAKGGCRMGASCKYVHHANSDCFSKVSVDESLREREISRRCIENSFEQGSRYAVNHSGDTPCKFFSSGNCRNGKICRYSHDRQACMSPNRRLRDDNRSRSNYGGDQMLDRPKVSDSVSHNEKLRYDRWSSDGNTADVDEVWDRPKQNDLVAGPGAAKQVVNNKNGILGAPELGLTAQPLGDGWDHSSDMNMLHCESPFSSDEKETNCLTSENTFANVQISQSIGAGIWPGDEEMSPDWKYGVGSSRHLEVKHGENKPQVYPGQGVNQNAQNVNSSSRRVFGQSQPEISIVRPSVGTVEGMQNKEISTDKKYTVGSDIMDASISQAGSRNPPTQNIVSNEQLAQLTCLTASLAHFLGTGQQLPQLYAPLNSHDAKDTSFPGRTEGSGMSVSTTFIKPAPAVGFQKQYDPICDSIETKNANAWEGPPGFSPIKKIAEDAVEIPPLLSNSERHNLIQLHQGENIEVNKESNEVVDEEMQISPRDNKSTKENGPLESTDQNGGHNEAKKKDMKGIRAFKYSLVEFIKELLKPTWKEGHITKEDYKAIVKKVSDKVTGTVQRLHIPQTQEKIDHYLSSSKPKLNKLVQAYVEKAQKA	837

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal14g1373	837	MobiDBLite	consensus disorder prediction	500	527	-	-
	Lal14g1373	837	PANTHER	ZINC FINGER CCCH DOMAIN PROTEIN-RELATED	1	835	-	-
	Lal14g1373	837	MobiDBLite	consensus disorder prediction	710	733	-	-
	Lal14g1373	837	ProSiteProfiles	Zinc finger C3H1-type profile.	177	204	IPR000571	GO:0046872
	Lal14g1373	837	Gene3D	-	178	266	-	-
	Lal14g1373	837	MobiDBLite	consensus disorder prediction	333	363	-	-
	Lal14g1373	837	ProSiteProfiles	Zinc finger C3H1-type profile.	237	264	IPR000571	GO:0046872
	Lal14g1373	837	SUPERFAMILY	CCCH zinc finger	304	326	IPR036855	GO:0046872
	Lal14g1373	837	ProSiteProfiles	Zinc finger C3H1-type profile.	302	328	IPR000571	GO:0046872
	Lal14g1373	837	SMART	c3hfinal6	301	327	IPR000571	GO:0046872
	Lal14g1373	837	SMART	c3hfinal6	238	263	IPR000571	GO:0046872
	Lal14g1373	837	SMART	c3hfinal6	177	203	IPR000571	GO:0046872
	Lal14g1373	837	PANTHER	PROTEIN FRIGIDA-ESSENTIAL 1	1	835	-	-
	Lal14g1373	837	MobiDBLite	consensus disorder prediction	710	751	-	-
	Lal14g1373	837	MobiDBLite	consensus disorder prediction	39	117	-	-
	Lal14g1373	837	MobiDBLite	consensus disorder prediction	67	81	-	-
	Lal14g1373	837	Gene3D	-	299	373	-	-
	Lal14g1373	837	MobiDBLite	consensus disorder prediction	505	527	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal14g1373	Lal-Chr14	15116424	15122156	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Lal14g1373		zf-CCCH	0.00032	CL0537

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal14g1373	-		K22909	gmx:100783856	878.241