Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1370 ATGGTTAGAGACGATCTATACATCACGGTTCCCAGTTTCTTCCGGTGTCCGATTTCACTCGACGTGATGAAATCCCCTGTCAGTCTCTGCACCGGAGTAACCTACGACCGCACCAGCATCCAACGCTGGCTCGACAACGGTAACAACACGTGTCCAGCCACCATGCAAGTCCTATACACAAAAGATTTCATTCCTAACAGTAATTTGCAGAGGCTTATTCAGATCTGGTCCGACTCGGTCCAACACCGGGTTGACTCGCCCGGTTCCAAAGCCGTTAATGAATCTGATTCAGTTCCTTCCAGGGACCAAGTCCTCACCGCTGTCGTTGACGTGGAAGGAAAGAGCCGAGTTGACCCGCTCATGAAAATTGTGCGTTTCGCATTAGATTCCGATGAGAACCGCGATTTTCTCGTGAAGATTGAAGGCTTCGTGGCTAGGCTAGTTGATTTGCTTCTCAATGTCAATGGTGGAGTCGAAGTTCTCGAGCTGGTTGTGAAGGCGTTGGATTTGGTTCTAGAGAAAATCGAAGATCACGAGTGGTTGAATAACTCGATGGTGAAGAAACAGCGCGAGGGAGAGAGCAGATGCGACTGCTTAGATTCTCTGCTTCTCGTTTTACAACATGGAAGCTCCGATTCAAGGATTGCATCGGTTAGGGTTTTGAAATCCATCGCCATGGACGCAGAATCGAAGCAATTGATAGCGGAGAAAGAAGGTCTACTATCCGAATTGCTCAAGCTAATCACACCGGAGAAAGATCCGTTGTTAATCGAAAACGGCTTGTCGTGTTTGATCGCAATATCGACGCCGAAACAGAACAAGGTGAAGCTAGTCAATCTCGGAGCGATCAGAACATTCTCGAAACTTCTATTGGAACCAAATATGAGCGTTTCGATTGTGGAAAAAGTGCTGAAGCTACTGGAAACGATGTCGTCGAGGAAGGAAGGGAGGGTTGAGATATGCGAGGAACCGGAGTGCGTGGCGGCGATACTAAACAAAGTGATAAAGATTTCAAACGTTGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTGTGTTATCTGTTTCGGGATCAGAAGGCGCAAGAAGCGGTTACCAAGGCCAACGGCTTAACCAAGATTCTGCTTCTGATGCAGAGTAATTGTTCTCCCTCGGTTCGCAAAATGTGTTCAGATTTGCTTAAGATTTTTAGGGTTAATTCCAAGTCTTGTCTCTCTTGTTATGACACCAAAACTTCCCATATTATGCCATTTTGA 1257 0.4733 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRTSIQRWLDNGNNTCPATMQVLYTKDFIPNSNLQRLIQIWSDSVQHRVDSPGSKAVNESDSVPSRDQVLTAVVDVEGKSRVDPLMKIVRFALDSDENRDFLVKIEGFVARLVDLLLNVNGGVEVLELVVKALDLVLEKIEDHEWLNNSMVKKQREGESRCDCLDSLLLVLQHGSSDSRIASVRVLKSIAMDAESKQLIAEKEGLLSELLKLITPEKDPLLIENGLSCLIAISTPKQNKVKLVNLGAIRTFSKLLLEPNMSVSIVEKVLKLLETMSSRKEGRVEICEEPECVAAILNKVIKISNVATEHAVTTLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPSVRKMCSDLLKIFRVNSKSCLSCYDTKTSHIMPF 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1370 418 Gene3D - 119 412 IPR011989 -
Lal14g1370 418 SUPERFAMILY ARM repeat 123 400 IPR016024 -
Lal14g1370 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 87 IPR013083 -
Lal14g1370 418 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lal14g1370 418 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 418 - -
Lal14g1370 418 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lal14g1370 418 CDD RING-Ubox_PUB 14 56 IPR045210 -
Lal14g1370 418 PANTHER WDSAM1 PROTEIN 4 418 IPR045185 GO:0061630
Lal14g1370 418 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Lal14g1370 418 SUPERFAMILY RING/U-box 5 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1370 Lal-Chr14 15096584 15097840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1370 1 418 U-box Gene Family AT5G64660 52.436 1.37e-140 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1370 - - gmx:100799627 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1370 14 15096584 15097840 Lal19g0935 19 13359583 13360848 LSH