Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1363 ATGTATGCTTTTACTTCCTTTACATCACAAAACATCCATCAACTTCTTGGGGACTCTCACTCAAGAAAGTTACTCCTTCAAAACCCATTTAACCAAGCCAACCCCCCTGCTGCTTCCATAAACAGCCATAACTCCACAAATCTATACTTCAGTGGCCGAAATTTCGATGCAAATGTTGTCATGATACTTTCAGTCCTATTGTGTGCTGTTATTTGTTTACTAGGGTTGAACTCCATCATAAGATGTGTGTTAAGGTGTTCATACTTGGTCATTGGTATTGACTCATCTAGAACAAGCAACCTTTCACCAAGAATAGTTAACATGGGAATCAAGAAAAAAGTTCTTAAGACTTTCTCTATAGTAACCTATTCAACTGAGATGAATCTTCCATGTATGGACACTGAGTGTGTAATATGCCTCTCAGAGTTCACCAAGGATGAGAAGGTTCGCATTTTGCCTAAGTGCAACCATGGTTTCCATGTTCCTTGTATTGATAAATGGCTTAGTTTACACTCATCTTGCCCCAAGTGCAGACAGTGCCTCATCGAGACTCGCCACAAGATTGTTGGATCACAACCTCGGCGTGTGGTACCAGTGCCAGAGCTGGAAACCATTATAAGGATTGAACCACTCGAGCCAGAAAGTTTGGTGCGTAACTATAGGGAATCAAGCTAA 675 0.4119 MYAFTSFTSQNIHQLLGDSHSRKLLLQNPFNQANPPAASINSHNSTNLYFSGRNFDANVVMILSVLLCAVICLLGLNSIIRCVLRCSYLVIGIDSSRTSNLSPRIVNMGIKKKVLKTFSIVTYSTEMNLPCMDTECVICLSEFTKDEKVRILPKCNHGFHVPCIDKWLSLHSSCPKCRQCLIETRHKIVGSQPRRVVPVPELETIIRIEPLEPESLVRNYRESS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1363 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 182 IPR013083 -
Lal14g1363 224 SUPERFAMILY RING/U-box 129 184 - -
Lal14g1363 224 SMART ring_2 136 177 IPR001841 -
Lal14g1363 224 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Lal14g1363 224 Pfam Ring finger domain 135 178 IPR001841 -
Lal14g1363 224 PANTHER RING-H2 FINGER PROTEIN ATL78 1 223 IPR044602 GO:0016567|GO:0016740
Lal14g1363 224 CDD RING-H2_PA-TM-RING 135 178 - -
Lal14g1363 224 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1363 Lal-Chr14 15062742 15063416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1363 32 182 C3H Transcription Factor Family AT3G10910 45.513 2.92e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1363 K19040 - gmx:100527126 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1363 14 15062742 15063416 Lal7g0808 7 14823609 14824630 LSH
Lal14g1363 14 15062742 15063416 Lal19g0932 19 13311265 13311933 LSH
Lal14g1363 14 15062742 15063416 Lal17g0724 17 5117173 5117862 PCT
Lal14g1363 14 15062742 15063416 Lal4g0616 4 4538163 4538840 PCT
Lal17g0724 17 5117173 5117862 Lal14g1363 14 15062742 15063416 PCT
Lal4g0616 4 4538163 4538840 Lal14g1363 14 15062742 15063416 PCT