LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal14g1361	ATGCTGCTTTTTCTAGTGGTTGATAAAAGATGGCTGACACAGAGGATATTCAACCTCTTGTTTGTGACAACGGAACTGGAATGGTCAAGGTTAGCAGGATTTGCTGGTGATGATGCACCCAGGGCTGTGTTTCCCAGTATTATCGGCCGGCCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGACGCCTATGTTGGTGATGAGGCTCAATCAAAAAGAGGTATTCTTACTCTGAAGTACCCTATTGAGCATGGTATAGTCAGCAATTGGGATGACATGGAGAAGATTTGGCATCACACATTCTACAATGAGCTTCGTATTGCTCCTGAGGAGCATCCAGTGCTTCTCACTGAGGCTCCTCTCAACCCAAAGGCCAACAGAGAAAAGATGACCCAAATCATGTTTGAGACCTTCAGTGTGCCTGCCATGTATGTTGCCATCCAGGCTGTCCTCTCTCTATATGCAAGTGGACGCACAACTGGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGGTTGGATCTTGCTGGTCGTGATCTGACTGATTCACTGATGAAGATCCTCACTGAGAGAGGGTACATGTTCACCACCTCTGCTGAGCGAGAAATTGTTCGTGATATGAAGGAGAAGCTTGCATATATTGCCCTCGATTATGAACAAGAACTCGAGACTGCCAAGACTGGTTCTTCAATTGAGAAAAGCTATGAGCTTCCTGATGGACAAGTTATCACAATTGGCGCCGAGCGATTCCGTTGCCCAGAGGTTCTTTTCCAGCCATCTATGATCGGAATGGAAGCTGCTGGAATTCATGAAACCACCTACAACTCTATCATGAAGTGTGATGTGGACATCAGAAAGGATCTGTACGGCAACATTGTTCTTAGTGGTGGTTCTACTATGTTCCCTGGCATTGCAGACCGGATGAGCAAGGAGATTACTGCTCTTGCTCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTCTGGATCGGAGGATCAATTCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATATCAAAGGGTGAATATGACGAGTCCGGTCCATCCATTGTCCACAGGAAGTGCTTCTAA	1167	0.4696	MLLFLVVDKRWLTQRIFNLLFVTTELEWSRLAGFAGDDAPRAVFPSIIGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETFSVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTSAEREIVRDMKEKLAYIALDYEQELETAKTGSSIEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF	388

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal14g1361	388	Gene3D	-	151	351	-	-
	Lal14g1361	388	SUPERFAMILY	Actin-like ATPase domain	31	166	IPR043129	-
	Lal14g1361	388	Gene3D	-	32	382	-	-
	Lal14g1361	388	ProSitePatterns	Actins signature 2.	369	377	IPR004001	-
	Lal14g1361	388	Gene3D	Actin; Chain A, domain 4	193	284	-	-
	Lal14g1361	388	PANTHER	ACTIN	31	387	IPR004000	-
	Lal14g1361	388	Pfam	Actin	32	388	IPR004000	-
	Lal14g1361	388	SMART	actin_3	31	388	IPR004000	-
	Lal14g1361	388	PRINTS	Actin signature	39	48	IPR004000	-
	Lal14g1361	388	PRINTS	Actin signature	62	73	IPR004000	-
	Lal14g1361	388	PRINTS	Actin signature	74	96	IPR004000	-
	Lal14g1361	388	PRINTS	Actin signature	128	141	IPR004000	-
	Lal14g1361	388	PRINTS	Actin signature	153	172	IPR004000	-
	Lal14g1361	388	PRINTS	Actin signature	249	265	IPR004000	-
	Lal14g1361	388	SUPERFAMILY	Actin-like ATPase domain	160	388	IPR043129	-
	Lal14g1361	388	CDD	NBD_sugar-kinase_HSP70_actin	87	194	-	-
	Lal14g1361	388	ProSitePatterns	Actins and actin-related proteins signature.	117	129	IPR020902	-
	Lal14g1361	388	PANTHER	ACTIN-7-LIKE	31	387	-	-
	Lal14g1361	388	ProSitePatterns	Actins signature 1.	66	76	IPR004001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal14g1361	Lal-Chr14	15057562	15059532	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal14g1361	32	388	Cytoskeleton Gene Families	AT5G09810	96.359	0.0	723

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal14g1361	K10355		-	gmx:100806695	709.138