Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1345 ACCCCTAGGCAAGGTCCTATGAATATAAAGACCACCCATTGTGATCTTCCTCATCACCCTTTAGCCTTTGCTTTCTTCCAGTATTCCACTTTAAAAAACCAAGAGGAATCTGGTAAGAGAAACCAAACAAGTCCTGTGGGAAGCCCAACATCAGGGAACATATCAGACAGTTCTTTATCAAAAGAACAAGACAGGTTCCTCCCCATAGCCAACGTAAGCCGTATCATGAAAAAGGCACTCCCAGCCAATGCTAAAATCTCAAAGGAAGCAAAGGAAACAGTGCAGGAATGTGTTTCAGAGTTCATAAGCTTCATCACTGGTGAAGCCTCAGACAAGTGCCAAAGGGAAAAGAGGAAGACAATCAATGGTGATGATCTTCTTTGGGCTATGACAACTCTTGGGTTTGAAAACTATGTTGGACCCTTGAAGGTTTATCTCAACAACTTCAGGGAAACTGAAGGGGAAAAAGGTAACTCTATGGCTAAACAAGAAGATCAGTGTCCAATAACAGAAGCCAGTGATAATGGTTTCAATAATGGTGGATTCTACACTGTTGGAGGGCTCACAAGTAATTACAGTGCAGTAAATGTTGATCAAAATGCAAATGATAATATGGCAAGGAACCTAAGTTATAGGGTTGAATGGTAG 648 0.4136 TPRQGPMNIKTTHCDLPHHPLAFAFFQYSTLKNQEESGKRNQTSPVGSPTSGNISDSSLSKEQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKVYLNNFRETEGEKGNSMAKQEDQCPITEASDNGFNNGGFYTVGGLTSNYSAVNVDQNANDNMARNLSYRVEW 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1345 215 Gene3D Histone, subunit A 54 176 IPR009072 GO:0046982
Lal14g1345 215 ProSitePatterns NF-YB/HAP3 subunit signature. 97 113 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lal14g1345 215 MobiDBLite consensus disorder prediction 34 61 - -
Lal14g1345 215 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Lal14g1345 215 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Lal14g1345 215 PRINTS CCAAT-binding transcription factor subunit A signature 132 150 - -
Lal14g1345 215 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 66 130 IPR003958 -
Lal14g1345 215 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 35 189 - -
Lal14g1345 215 SUPERFAMILY Histone-fold 63 174 IPR009072 GO:0046982
Lal14g1345 215 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 35 189 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1345 Lal-Chr14 14939272 14940344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1345 47 166 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.333 9.44e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal14g1345 CBFD_NFYB_HMF 3.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1345 K08065 - gmx:100810059 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1345 14 14939272 14940344 Lal14g1345 14 14939272 14940344 ECH