Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1256 ATGGAAATTCATTACAGTCAGAGTTACTTTGAAAGGCGTCCCATCATTAAATCTAAGGCTCCTGCAGTAAAATGGGTCAAAGAATGGGTTCCTCAAGATGTTGTAGCAACTGGGGGTAAGTGCATGCTCTTAAGATGGGTAACAGAGGATACCTTAAAGGCCTTGAAAGAAAAGGAGAAAGAACCATCAGCGCCTCAGACAGAACCAGAGCCAACTACTGAAGTTCTTTTCCTTTGCAGTTATGAAGGCTGCGGAAAAACATTCATAGATGCTGGTGCATTGAGGAAGCACTCTCATATCCATGGAGAGAGGCAATATGTTTGTCACTATGAGGGATGTGGAAAGAAATTTCTGGATAGCTCAAAGTTGAAAAGACACTTTCTTATTCATACAGGGGAAAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGTGATAACTCTATCCATTGACAAGGGTTTGATCATATTTTCTGCCTTCTCCCTGGATTTCAATCTGAGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATCTGCCCATACACAGATTGTGGAAAGAGATATGCTCACGAATACAAGCTAAAGAATCACATTGCATCACATCACGGAAAGAATCCATCAGTGGATGTGACTCCTGTGAGTCATGTGACAAAGTACACTCCAGCTTCAGAAAAGCAAACAAAAAGTAAACATTCTGGAGGAGCATATGGTTCCACATCATCTGATCGTCCATATGCGTGTCCTTATGAAGGGTGTGAGAAAGCATACATCCATGAATACAAGCTTAAACTCCATCTGAAAAGGGAGCATCCCGGGCATAACGAACATGCTCAGGCTAATGCTGACAATGAAATAGATGATGAAGCAAGTGACCAAGATGCCTACAGTGGTGGGAAACGTTCAAATGGTAAGAATCAGAAGCAAAGTAAGTCCAAACCAAACCTGAAGTTGCCTCCATCAAAAGTTGCAAAACGCAAAGGGTCATCCACTCCCTCTCTTGCCTCTTTAGCTGCTATAGCTAAAAAACCTTGGCCTCTGAAACAGGAAACTTATGATGAGGAAGATAGTGAAGAGACAGAAGAGGATCGCGACAATGTTGAAGATGGTTGGAGGTATGCAGGAAACAACCAAGAAGACGATGAAGAAACAGAATATGAAGACTGA 1173 0.4211 MEIHYSQSYFERRPIIKSKAPAVKWVKEWVPQDVVATGGKCMLLRWVTEDTLKALKEKEKEPSAPQTEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKVITLSIDKGLIIFSAFSLDFNLRSHMKTHSQENYHICPYTDCGKRYAHEYKLKNHIASHHGKNPSVDVTPVSHVTKYTPASEKQTKSKHSGGAYGSTSSDRPYACPYEGCEKAYIHEYKLKLHLKREHPGHNEHAQANADNEIDDEASDQDAYSGGKRSNGKNQKQSKSKPNLKLPPSKVAKRKGSSTPSLASLAAIAKKPWPLKQETYDEEDSEETEEDRDNVEDGWRYAGNNQEDDEETEYED 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1256 390 Gene3D Classic Zinc Finger 133 177 - -
Lal14g1256 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 209 IPR013087 -
Lal14g1256 390 MobiDBLite consensus disorder prediction 222 246 - -
Lal14g1256 390 SUPERFAMILY beta-beta-alpha zinc fingers 160 209 IPR036236 -
Lal14g1256 390 MobiDBLite consensus disorder prediction 276 390 - -
Lal14g1256 390 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 390 - -
Lal14g1256 390 Gene3D Classic Zinc Finger 103 132 - -
Lal14g1256 390 SUPERFAMILY beta-beta-alpha zinc fingers 243 271 IPR036236 -
Lal14g1256 390 ProSitePatterns Zinc finger C2H2 type domain signature. 250 273 IPR013087 -
Lal14g1256 390 Gene3D Classic Zinc Finger 178 206 - -
Lal14g1256 390 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Lal14g1256 390 MobiDBLite consensus disorder prediction 298 318 - -
Lal14g1256 390 ProSitePatterns Zinc finger C2H2 type domain signature. 182 205 IPR013087 -
Lal14g1256 390 Gene3D Classic Zinc Finger 220 293 - -
Lal14g1256 390 MobiDBLite consensus disorder prediction 222 242 - -
Lal14g1256 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Lal14g1256 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Lal14g1256 390 PANTHER BNAA03G13270D PROTEIN 4 390 - -
Lal14g1256 390 SUPERFAMILY beta-beta-alpha zinc fingers 78 102 IPR036236 -
Lal14g1256 390 Gene3D Classic Zinc Finger 77 102 - -
Lal14g1256 390 SUPERFAMILY beta-beta-alpha zinc fingers 95 143 IPR036236 -
Lal14g1256 390 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Lal14g1256 390 SMART c2h2final6 106 130 IPR013087 -
Lal14g1256 390 SMART c2h2final6 248 273 IPR013087 -
Lal14g1256 390 SMART c2h2final6 136 174 IPR013087 -
Lal14g1256 390 SMART c2h2final6 180 204 IPR013087 -
Lal14g1256 390 SMART c2h2final6 77 101 IPR013087 -
Lal14g1256 390 ProSiteProfiles Zinc finger C2H2 type domain profile. 248 278 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1256 Lal-Chr14 14365505 14370250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1256 7 376 C2H2 Transcription Factor Family AT4G06634 62.887 6.44e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal14g1256 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1256 - - lang:109362995 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1256 14 14365505 14370250 Lal14g1256 14 14365505 14370250 ECH
Lal14g1256 14 14365505 14370250 Lal7g0726 7 14185282 14189846 LSH