Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1230 ATGGTTTTTCCAAACCAATCCATGTTAGTTTCTGACCAGAGAAAGATTAATGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACATCACCAATCGCCAAGTTACCTTTTGTAAGCGCAGAAATGGATTGCTGAAGAAGGCATATGAACTTTCTGTTCTTTGTGATGCAGAAGTTGCTCTAATAGTATTCTCAAGCCGTGGCCGCCTCTATGAATATGCTAACAATAGTGTTAAAGCATCTATTGAAAGGTACAAGAAAGCAAATTCAGATTCCTCTAGTGCTGGATCCACTTCTGAGGCTAATGCTCAGTTTTACCAACAAGAAGCTGCCAAGCTGCGTGTGCAAATCAGTAACCTGCAGAATCACAACAGGCAAGTTGAATTAATATTCCATGTGCAAATGATGGGTGAGGCTTTGAGCCCTATGAATGCGAAGGAACTTAAAAGCCTTGAGACTAAATTAGAAAAGGGGATTAGCAGAATTCGTTCCAAGAAGGAGATAGACTTGCATAATAACAATCAGCTTCTTAGAGCAAAGATAGCAGAAAGTGAAAGGATCAACCATAATATTGATGTGTTACCTGGAGTCCCAAACTATGAATCTATGGAATCTCAGCAACAGTTTGACTCTCGTGGCTACTTCCAAGTTAATGGATTACAACCCAATAATCAGTATGGAAGGCAAGACCATATGTCACTTCAATTAACGTAA 714 0.3978 MVFPNQSMLVSDQRKINGRGKIEIKRIENITNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKASIERYKKANSDSSSAGSTSEANAQFYQQEAAKLRVQISNLQNHNRQVELIFHVQMMGEALSPMNAKELKSLETKLEKGISRIRSKKEIDLHNNNQLLRAKIAESERINHNIDVLPGVPNYESMESQQQFDSRGYFQVNGLQPNNQYGRQDHMSLQLT 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1230 237 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Lal14g1230 237 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Lal14g1230 237 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Lal14g1230 237 ProSiteProfiles K-box domain profile. 103 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal14g1230 237 Coils Coil 103 123 - -
Lal14g1230 237 PANTHER MADS BOX PROTEIN 15 231 - -
Lal14g1230 237 SUPERFAMILY SRF-like 18 90 IPR036879 GO:0003677|GO:0046983
Lal14g1230 237 Gene3D - 30 126 IPR036879 GO:0003677|GO:0046983
Lal14g1230 237 CDD MADS_MEF2_like 18 89 IPR033896 GO:0000977|GO:0045944
Lal14g1230 237 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Lal14g1230 237 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Lal14g1230 237 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Lal14g1230 237 PANTHER AGAMOUSB 15 231 - -
Lal14g1230 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Lal14g1230 237 Pfam K-box region 99 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1230 Lal-Chr14 14189891 14197151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1230 18 237 MADS-box Gene Family AT3G58780 58.333 7.70e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal14g1230 K-box 3.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1230 K09264 - gmx:732595 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1230 14 14189891 14197151 Lal14g1230 14 14189891 14197151 ECH
Lal14g1230 14 14189891 14197151 Lal5g1334 5 16027148 16031313 PCT
Lal14g1230 14 14189891 14197151 Lal3g0385 3 2623389 2629137 PCT
Lal5g1334 5 16027148 16031313 Lal14g1230 14 14189891 14197151 PCT
Lal3g0385 3 2623389 2629137 Lal14g1230 14 14189891 14197151 PCT