Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1225 ATGGCTTCTGGTGCTATATTCTCGTCGCTGCGGCGGCGCCGGTTGCCGTCGATCGAGACGTTCCTCGCATCGATTGACCTCAGCGACGTGGCGCTTGTCCAGACCCTCATCTCTGTCGCCGGTGAACTTGTGTCGTGTTTCTCCGATCACCGGTTCCCTTTCCAGCGCAAGAATTCGCGGTCTCTTGTTCGAAAAATTGAAGTTTTTCAACTCCTGTTGGAATGTTTGAAGGATTCCCTAAAATTGAGTTTGCCGTCTCCCACTGTAGTGCTATGCTTGAAGGAGCTATATCTGCTTCTTTATCGGTCCAAGATTCTTTTGGATTATTGTGCGCAATCGAGTAAGCTGTGGCTTTTGCTTCATAACCATTCAATTTCAGGTCATTTCCACGATTTGAACCAAGAAATTTCGACCCTTTTGGATGTTTTTCCCGTTAAAGAAGTTGAATTGATTGATGATGTTAGGGAACATGTTGAATTGTTGAGGAAACAGGGTAGGAATGCTAAACTGTTTGTAGATAAGAATGATGATGCCCTTAGGATAAGGTTCTTTTCCTTCCTTGATGAGTTTGAGAATGGTAGGATTCCTAATTCGCATGAATTAAAAGCTTTCTTTGTGGATAAATTGAAGATTTCGGATGCTAGCCGTTGTAGGGATGAAATTGAATCCTTGGAGGAGCAGATTATTAATCATGAGGGTGATGTTGAGCCGACGATTTCTGTGCTTAATGGTTTGGTGGCAATGACGCTGTATTGCAGGTTTTTGCTCTTTGGAATTGAGGAAGATGAGCTTGATATGGAAAATGGTAATCAGAAGAAGGTTAAGAAGAGATTGATTACTCAAGAAATCGCTGAAACTTTTCTGACTACTCCAAAGGACTTTTGCTGTCCGATATTGTTGGATTTGATGTGCGACCCTGTGATAATATCGACCGGACAAACTTATGATCGGAAGTCTATATCGAGGTGGATGGAGGAAGGGCATTGTACTTGTCCGAAAACGGGGCAAATGCTTGCCCACAACCGCCTTGTTCCTAATCATGCTCTTAGGAACTTGATCATGCAGTGGTGCACTGCAAATGGTATACCCTATGATCCAACAGAGGTTGTCGATGCATCGGCTGAAACATTTGCATCAGCTTGTCCATCCAGAGCTGTTCTTGAGGCCAACAGAGCTACATCAACACTTCTTATTCAGCAGCTAGCTGATGGTTCACAACCTGCGAAGACTATAGCTGCTCAAGAGATACGATTGCTAGCAAAAACTGGAAAAGAAAACCGTGCTTTCATTGCAGAAGCAGGGGCAATTCCCTATCTTCGAAACTTATTGTCGTCTCCTAATGCTGTTGCACAGGAGAATTCCATTACTGCATTGCTTAACCTATCCATTTTCGACAAAAATAAAAGCCGGATCATGGATGAGGAAGGGTGTCTGGGATCAATAGTTGAGGTGCTGAGATTTGGGCACACAACAGAGGCAAAGGAAAATGCTGCTGCAACATTGTTCAGCCTTTCTGTTGTCCATGACTATAAAAAGAGAATTGCAGATAATGTGCAAGCTGTTGAAGCATTGGCAGGTCTTTTGCAAGAAGGGACCCCAAGAGGAAAGAAGGATGCTGTAACAGCATTATTCAATCTTTCCACCCACACTGAGAATTGTGTGAGAATTATAGAGGCGGGAGCAGTAACAGCTTTAGTCAGCGCTTTGGGGAATGAAGGAGTTTCCGAGGAAGCAGCTGGTGCCCTTGCATTGATTGTTCGTCAGTCCGTTGGGGCAAAAGCAGTGGTAATGGAGGAAGCAGCAGTAGGTGGGTTGATAGGAATGATGCGCTGTGGAACAGCACGAGGTAAAGAGAATGCAGTTGCAGTGTTGCTGGAGTTGTGCAGGAGCGGCGGCGCTTCTGCAATTCAAAAGGTGATTAGAGCGCCAGCTTTGGCTGGATTACTTCAAACCCTGCTCTTCACAGGAACAAAGCGAGCACGACGGAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAGAATGCATTTCTACCCTATGGCGGATTGGGTGTGGGGTATACATTTGCTAGCAATTCTACTTCGACAAGGGATCATACAAGCTTTGCTGATGATGTTTCAGTACCAATGTCCATTTCTCTCCCTGTTTTATAG 2157 0.4474 MASGAIFSSLRRRRLPSIETFLASIDLSDVALVQTLISVAGELVSCFSDHRFPFQRKNSRSLVRKIEVFQLLLECLKDSLKLSLPSPTVVLCLKELYLLLYRSKILLDYCAQSSKLWLLLHNHSISGHFHDLNQEISTLLDVFPVKEVELIDDVREHVELLRKQGRNAKLFVDKNDDALRIRFFSFLDEFENGRIPNSHELKAFFVDKLKISDASRCRDEIESLEEQIINHEGDVEPTISVLNGLVAMTLYCRFLLFGIEEDELDMENGNQKKVKKRLITQEIAETFLTTPKDFCCPILLDLMCDPVIISTGQTYDRKSISRWMEEGHCTCPKTGQMLAHNRLVPNHALRNLIMQWCTANGIPYDPTEVVDASAETFASACPSRAVLEANRATSTLLIQQLADGSQPAKTIAAQEIRLLAKTGKENRAFIAEAGAIPYLRNLLSSPNAVAQENSITALLNLSIFDKNKSRIMDEEGCLGSIVEVLRFGHTTEAKENAAATLFSLSVVHDYKKRIADNVQAVEALAGLLQEGTPRGKKDAVTALFNLSTHTENCVRIIEAGAVTALVSALGNEGVSEEAAGALALIVRQSVGAKAVVMEEAAVGGLIGMMRCGTARGKENAVAVLLELCRSGGASAIQKVIRAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENAFLPYGGLGVGYTFASNSTSTRDHTSFADDVSVPMSISLPVL 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1225 718 Pfam U-box domain 291 360 IPR003613 GO:0004842|GO:0016567
Lal14g1225 718 Coils Coil 214 234 - -
Lal14g1225 718 CDD RING-Ubox_PUB 294 336 IPR045210 -
Lal14g1225 718 Gene3D - 366 518 IPR011989 -
Lal14g1225 718 SMART arm_5 423 463 IPR000225 GO:0005515
Lal14g1225 718 SMART arm_5 549 587 IPR000225 GO:0005515
Lal14g1225 718 SMART arm_5 508 548 IPR000225 GO:0005515
Lal14g1225 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 362 IPR013083 -
Lal14g1225 718 Gene3D - 519 678 IPR011989 -
Lal14g1225 718 SUPERFAMILY ARM repeat 396 676 IPR016024 -
Lal14g1225 718 PANTHER U BOX DOMAIN-CONTAINING 12 695 - -
Lal14g1225 718 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Lal14g1225 718 Gene3D - 27 146 IPR036537 GO:0007166
Lal14g1225 718 Pfam Armadillo/beta-catenin-like repeat 424 462 IPR000225 GO:0005515
Lal14g1225 718 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 695 - -
Lal14g1225 718 SUPERFAMILY RING/U-box 278 363 - -
Lal14g1225 718 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Lal14g1225 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1225 Lal-Chr14 14148317 14150473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1225 1 718 U-box Gene Family AT1G29340 67.799 0.0 921
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1225 - - gmx:100811153 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1225 14 14148317 14150473 Lal14g1225 14 14148317 14150473 ECH
Lal14g1225 14 14148317 14150473 Lal5g1319 5 15847514 15849661 PCT
Lal14g1225 14 14148317 14150473 Lal3g0401 3 2771052 2774243 PCT
Lal5g1319 5 15847514 15849661 Lal14g1225 14 14148317 14150473 PCT
Lal3g0401 3 2771052 2774243 Lal14g1225 14 14148317 14150473 PCT