Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1131 ATGGGTGAAGAAATTATGGGTCGTAGAAAGATTGAGATTAAGATGGTGAAGGACACCAACACCAGACAAGTAACATTTTCAAAGCGCAGAACAGGTTTATTCAAGAAAGCAAATGAATTATCCATTTTGTGTGGAGCTGAAGTTGCTATTGTTGTGTTCTCTCCTGGTAATAAACCTTACTCTTTTGGGCACCCTGATGTGGAATCTGTTGCATCCAAATTTCTTGAACAAGATCAGCCTCGATCAAACGTGTCATCTTCTTGTAATGCTAACATGGAGAAGCTAAATCAACAACTTAATAATGTGATGGATCAGTTACATGAAGAGGAAAAGAAAGGTGAGGTTCATGATGAAGCCCTTAATCAACGCAAAAAGACCAAACTCGAGGAGCTTCAAGAATTGCTTGATTTAGCTGCAGAACTCAAATTCAATGTAAAGTCTCGTTTAGATGATATGGAGGCAGTGGAAACTATGCTAATGATTAAAGAGAAACCCATGGAGTTTGATGAAAATCATGTTTCTAAAAGGAAAAGAAAAGAGGATTAA 546 0.3736 MGEEIMGRRKIEIKMVKDTNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPDVESVASKFLEQDQPRSNVSSSCNANMEKLNQQLNNVMDQLHEEEKKGEVHDEALNQRKKTKLEELQELLDLAAELKFNVKSRLDDMEAVETMLMIKEKPMEFDENHVSKRKRKED 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1131 181 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Lal14g1131 181 PANTHER MADS BOX PROTEIN 7 170 - -
Lal14g1131 181 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 7 170 - -
Lal14g1131 181 SUPERFAMILY SRF-like 6 79 IPR036879 GO:0003677|GO:0046983
Lal14g1131 181 CDD MADS_MEF2_like 7 76 IPR033896 GO:0000977|GO:0045944
Lal14g1131 181 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Lal14g1131 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 62 IPR002100 GO:0003677|GO:0046983
Lal14g1131 181 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Lal14g1131 181 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Lal14g1131 181 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Lal14g1131 181 Gene3D - 19 111 IPR036879 GO:0003677|GO:0046983
Lal14g1131 181 Coils Coil 179 181 - -
Lal14g1131 181 Coils Coil 85 112 - -
Lal14g1131 181 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1131 Lal-Chr14 13429158 13429826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1131 6 164 Type I MADS-box Gene Family AT2G34440 38.953 1.57e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal14g1131 SRF-TF 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1131 - - lang:109342374 177.563