Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1111 ATGATGGATGTGGCTGAGGTTGAAAAAAATCTGTTTGCAGCAAGTGATGTTAAGTTACATGGAGAAATGTGCATGTCACTATCAGTAATATATTGCAAAGTATTGTCAGTATTTCCTTATTTAGAAGCTACTAGGCCTCGGAGCAAATCCGGAATTCGGGCATTATGTTCATTGCATGTAGCCCTAGAGAAGGCCAAGAATGTTCTGCAGCACTGCTCAGATTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGCTAGATGTTCTCTTGAAGATAGTCTTAAACATGTGGAAAATATTGTTCCGCGATCTATTGGATTTCAGATTCAGGAGATTTTGGATGAACTTGTGAGTGTTGTATTTGCACTTGACCCATCAGAGAAGCAAGTTGGCGATGCTTTAATTGCACTGCTTCAGCAGGGGAGAAAGTTCAACAATGGTAACAACAGTAATGAGCTTGAATCTTTTCACCAGGCCACCATTATACTTGGAATTACATCTTCAGGAGCAGCTCTTACTGAGAGAAGGGCCCTCAAGAAACTCATAGAAAGGGCTCGGGCTGAGGAAGACAAGCGGAAGGAATCAATCATTGCATATCTTTTACATCTTATGAGGAAATACTCTAAGTTATTTAGAAGTGAAGTCTCAGATGACAATGACTCTCAGGGTTCTGGTCCTTGTTCTCCAACTGTCCAAGGATCTTTTAAGGATGGAGTTTCTGTTGGTCATTATCAGGCCTTTGACAGACAGCTTTCAAAACTGAGTTCCTTTAAGTTTAAGCCATATAATAGGACATCAGGCCAGATGCCCATTCCACCTGAAGAGCTAAGGTGTCCAATATCTCTGCAACTCATGCATGATCCTGTTATCATTGATTCTGGGCAAACATTTGAAAGGGTTTGCATCAAGAAATGGTTCAGTGATGGGCACAACACCTGCCCTAAGACCCAACAGAAACTTTCACATCTTTGTTTGACTCCTAATTATTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACATAATGGAGTTCCTTCTCCTGAAGGCCCTCCTGAATCCCTTGATCTTAATTACTGGGGATTAGCATTATCAGAGTCTGAATCTATAGATTCAAGATCTGTAAACAGTGTCAGCTCTTGCAAATTGAAAGGTGTCAAAGTAGTTCCTTTAGAAGAGAATGATATCTTAGAGGAAACAGAGGAAAATGGAACTGAAAGCGTATCTACAGAAGAGGTAGATGCTGACCAGTATTTAAATTTTCTGAAAGTTTTGACTGAGGGGAACAATTGGAAGATGAAGTGCAAAGTGGTAGAAAGATTAAGGCTGATGCTGAGAGATGACAAGGAAACCAGGAATTTTATGGGAGCTAATGGGTTTGTTGAAGCACTTTTGCTTTTTTTGCAATCAGCTTTGCATGAAGGGAATTTTATGGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTGGCTGTAAACAACAACAGAAATAAGGAAATTATGTTATCATCGGGCTTATTACCGTTGTTGGAGGAGATGATTTCTAACAGTAGTTGTTATGGTTGTGCAACTGCCCTGTATCTGAATCTCTCTTGCCTTGAAGAAGCAAAGCCTATGATTGGCATGAGTCAGGCTGTTCAGTTCCTAACCCAACTTCTTCAAGATGACTCTGATGCTCAATGCATGCAGGATTCTCTTCATGCTCTCTATAATCTTTCTACGGTGCCCTCCAATATTCCATACCTCCTTTCATCAGGAATCATTAATGGCCTACAATCTCTTCTTGTAGGACACAGCGATTGCTTGTGGACAGAAAAATGTATAGCTGTTTTGATAAACTTAGCAACTTCTCAAATCGGAAGAGAGGAAATGGTTTCAAATCCCGGACTTATAAGTGCACTGGCTTCTATTTTGGACATTGGTGAGCTCCTAGAACAGGAGCAAGCTGTGTCTTGTATCTTAATTTTGTGTAACAGAAGTGAGAAATGTAGCGAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTTTCAATATCAGTGAATGGGACCTCAAGAGGGAGAGAAAGAGCTCAGAAACTCTTGATGCTGTTCCGAGAGAAACGACAACGAGACCATTCACCAGTTGAAACACGCCAGTGCCCTCCTGAAACTAGTGATTTGTCTACGCCGCCTGCTGAAACGGTACCACAATGCAAGTCCAGGTCTAGAAAAAAGTCAGGGAAAGCTTTTAGTTTTTTCTGGAAAGCTAAAAGCTATTATTCCCTTTCCCAGTGTTAG 2301 0.4107 MMDVAEVEKNLFAASDVKLHGEMCMSLSVIYCKVLSVFPYLEATRPRSKSGIRALCSLHVALEKAKNVLQHCSDCSKLYLAITGDSVLLKFEKARCSLEDSLKHVENIVPRSIGFQIQEILDELVSVVFALDPSEKQVGDALIALLQQGRKFNNGNNSNELESFHQATIILGITSSGAALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQGSFKDGVSVGHYQAFDRQLSKLSSFKFKPYNRTSGQMPIPPEELRCPISLQLMHDPVIIDSGQTFERVCIKKWFSDGHNTCPKTQQKLSHLCLTPNYCVKGLVASWCEHNGVPSPEGPPESLDLNYWGLALSESESIDSRSVNSVSSCKLKGVKVVPLEENDILEETEENGTESVSTEEVDADQYLNFLKVLTEGNNWKMKCKVVERLRLMLRDDKETRNFMGANGFVEALLLFLQSALHEGNFMAQESGAMALFNLAVNNNRNKEIMLSSGLLPLLEEMISNSSCYGCATALYLNLSCLEEAKPMIGMSQAVQFLTQLLQDDSDAQCMQDSLHALYNLSTVPSNIPYLLSSGIINGLQSLLVGHSDCLWTEKCIAVLINLATSQIGREEMVSNPGLISALASILDIGELLEQEQAVSCILILCNRSEKCSEMVLQEGVIPALVSISVNGTSRGRERAQKLLMLFREKRQRDHSPVETRQCPPETSDLSTPPAETVPQCKSRSRKKSGKAFSFFWKAKSYYSLSQC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1111 766 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Lal14g1111 766 Gene3D - 403 718 IPR011989 -
Lal14g1111 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Lal14g1111 766 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Lal14g1111 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Lal14g1111 766 SUPERFAMILY ARM repeat 427 707 IPR016024 -
Lal14g1111 766 MobiDBLite consensus disorder prediction 719 737 - -
Lal14g1111 766 MobiDBLite consensus disorder prediction 709 748 - -
Lal14g1111 766 CDD RING-Ubox_PUB 284 326 IPR045210 -
Lal14g1111 766 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Lal14g1111 766 SUPERFAMILY RING/U-box 277 353 - -
Lal14g1111 766 PANTHER U BOX DOMAIN-CONTAINING 2 759 - -
Lal14g1111 766 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1111 Lal-Chr14 13284918 13290368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1111 2 756 U-box Gene Family AT1G24330 63.506 0.0 983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1111 - - gmx:100794099 1208.74