LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal14g1076	ATGCTTCCAAATGGTGTTGACCAAGATGGTGAGAAATCAAGGAGCAAGTTATCAAGACACAATTTTGAGCCTAACAAAGAGTACCCAGATGAGAAAGGTGTTCAATTTCTGAGAGATTCAGAGGTGGGTGTTGATAAAATTCTTCATTCAAAACCCACCACCACCAAGTTTGATGGTTCCAGCTCAGGGTTTCAGGAACTGACCCTCAGTTACCTTTGTGACAACACAAAATTGAGTCTTGCTGAGAAGGAGAAAAGATTGGTGAGTTATTCCATGGAAAAAGTTAGCCATAAAGGTAAAGAGGTTGTTGGTTTTTCTGAGAATTCAAATCTGGATGGTAAATGGGTGGAAAGAGATTTCTTGAGTTTGAGTGAATCTAAAGAGAATTGTTCAAAGAGATCAATTGAAGAAGTTGAAAAAGAAAGTAATAGGGAGAAGAAACCAAAGTTAGAGACACTTAATCTCTCTCTTGCTTTGCCTGATGTTTCACTTTCTCTCACAGCTTCAAATGCTTTGCAAAATGGTGCTGCTGTTGCTGATCAACAATCACTTATGCCTAAGCCAATTAGGCCTTCAACTACTACTACTCACACCTCATTCTCAAATGATTATACAACACCTTCTCTGTCTTACTCTTATTCTCACCAATTCTCACACAACCCAAGTTGCTCACTGACTCACAATTCAACTGAGAATTTTGATTACTCAGTGAGCAAAGATGACCATATTTGGAATTGTGGTGAGGGAACTAATGGTTCTGTTCATAGCAGGTTCAAGCCAATAGGAGATGGTGGTGTTGCTTTCTCCAATCATGGTGGTGGTGGTGGTTTTAGTTCTTTTATGCAAGGTAATAATAGTCAATACAAAACTACTAGTTCAGAAAACCATTCATTTTTTCCTTCAGAATTGCCTGCTAGACCAAGGTTTGAAACTCAGTCTGGAGACTCAAGAGGAAGGAATTCTGAGAATCTGAGAGTTTTGGAAGATTTTGATGGTGGGAAGGTAAGGAAGGTTTCTAGGCCAGAGAGAATAATCAGAGAGATTGTTCATGACTCTATACCCGCTATGGCAGTGACAATTCAAGAGCTTACTGATGAAGTCATAGCATCAATGAAGGAATACTTGAAGATTCTCATTGAGAAGCCTGAGAAGAAAGAGGAATTGGTGAGCCTCCAAAAAAGGCTTGAGAGAAGATCTGATCTTACCAATGAGTGTCTTTCAAAGTGCCAAAAGGTGCAATTAGAGGTTCTAGTTGCTGTCAAGATGGGGCACGCGAGCTTCTTATCTGGTAAACTTAACTTATCTGAGATGGTAGATATTTTTATGTATAAGAGATGTAGAAATGTGAACTGCAAGAGTGTGCTTCCTGTTGATGACTGTGAGTGCAAGATTTGCTCAGGGAATAAGGGCTTTTGTAGTTCTTGCATGTGTCCTGTATGTTTGAACTTTGACTGTGCTAGCAACACTTGTAGTTGGATTGGTTGTGATGTTTGCTCCCATTGGTGCCATGCCACTTGTGGCATTCAGAAGAATCTCATCAAGCCTGGGCCTAGCTTGAAGGGACCTCCCGGTACCTCGGAGATGCAGTTCCATTGTATTGGCTGTGGACATGCTTCTGAAATGTTCGGGTTCGTTAAAGATGTGTTCTTATGTTGTGCAAAGGATTGGGGTATAGAAACCTTGATGAAGGAGCTTGACTGTGTAAGGAGGATTTTCAGGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTTAAAACCGATGATATGATGTTAAAGCTTCAAACAAAGATGGTTTCTCCTTCGGATGCCTGCAGCTATATTGTACAATTTTTCAGCTATGCGGATAGCATACCCGACTTTCCTCCTTCCAATATATCTTCGAAGGGTTTGGCAACATCTCAAGCTAACCATTCAAAGGAAACACTACCGCTTTCAAAATCTAGTTCTCTAATACCAAAATATCCTTATGAAATGAGCTATTCTAGGTCACATTCAGATGCTCATGCCATGTCAAATAATATTCATCAGAAAGACCTCCAAGCTTCCCTCTTAAGTGAACTAAAAACCGAGGCGGATTTCCATTTGGGGGCTTTATTAAGGAAAGGTGGAGTCGAAAGCTTGGAGAGCGTCGTGCGGATAAAGGAGGCCGAGACCAGAATGTTCCAAACCAAGGCAGATGAAGCGAAGCGAGAGGCAGAAGGATTCCAGAGGATGATCCGAACAAAGACTGCACAGATGGAAGAAGAATATGCTGAAAAGCTTGGCAAACTGTGTTTGCATGAGACCGAGGAAACGCAAAGGAAGAAATTGGAGGAACTGAAAGTCTTGGAAAACTCTCATTATGATTACTATAAAATGAAAATGAGAATGCAAGATGAGATTGCTGGTTTGTTGGAGAGAATGGAGGCGACAAAGCAGCATTGGGTTTAA	2433	0.4098	MLPNGVDQDGEKSRSKLSRHNFEPNKEYPDEKGVQFLRDSEVGVDKILHSKPTTTKFDGSSSGFQELTLSYLCDNTKLSLAEKEKRLVSYSMEKVSHKGKEVVGFSENSNLDGKWVERDFLSLSESKENCSKRSIEEVEKESNREKKPKLETLNLSLALPDVSLSLTASNALQNGAAVADQQSLMPKPIRPSTTTTHTSFSNDYTTPSLSYSYSHQFSHNPSCSLTHNSTENFDYSVSKDDHIWNCGEGTNGSVHSRFKPIGDGGVAFSNHGGGGGFSSFMQGNNSQYKTTSSENHSFFPSELPARPRFETQSGDSRGRNSENLRVLEDFDGGKVRKVSRPERIIREIVHDSIPAMAVTIQELTDEVIASMKEYLKILIEKPEKKEELVSLQKRLERRSDLTNECLSKCQKVQLEVLVAVKMGHASFLSGKLNLSEMVDIFMYKRCRNVNCKSVLPVDDCECKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHATCGIQKNLIKPGPSLKGPPGTSEMQFHCIGCGHASEMFGFVKDVFLCCAKDWGIETLMKELDCVRRIFRGSEDRKGKELHVKTDDMMLKLQTKMVSPSDACSYIVQFFSYADSIPDFPPSNISSKGLATSQANHSKETLPLSKSSSLIPKYPYEMSYSRSHSDAHAMSNNIHQKDLQASLLSELKTEADFHLGALLRKGGVESLESVVRIKEAETRMFQTKADEAKREAEGFQRMIRTKTAQMEEEYAEKLGKLCLHETEETQRKKLEELKVLENSHYDYYKMKMRMQDEIAGLLERMEATKQHWV	810

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal14g1076	810	Pfam	Coiled-coil region of Oberon	675	799	IPR032535	-
	Lal14g1076	810	Pfam	PHD - plant homeodomain finger protein	446	570	IPR032881	-
	Lal14g1076	810	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	11	810	IPR004082	-
	Lal14g1076	810	Coils	Coil	788	808	-	-
	Lal14g1076	810	Coils	Coil	760	780	-	-
	Lal14g1076	810	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	359	381	IPR004082	-
	Lal14g1076	810	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	398	413	IPR004082	-
	Lal14g1076	810	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	437	458	IPR004082	-
	Lal14g1076	810	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	483	503	IPR004082	-
	Lal14g1076	810	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	556	575	IPR004082	-
	Lal14g1076	810	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	706	726	IPR004082	-
	Lal14g1076	810	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	745	767	IPR004082	-
	Lal14g1076	810	MobiDBLite	consensus disorder prediction	278	299	-	-
	Lal14g1076	810	PANTHER	PROTEIN OBERON 3	11	810	-	-
	Lal14g1076	810	MobiDBLite	consensus disorder prediction	9	34	-	-
	Lal14g1076	810	MobiDBLite	consensus disorder prediction	278	323	-	-
	Lal14g1076	810	CDD	PHD_OBE1_like	476	535	-	-
	Lal14g1076	810	Coils	Coil	726	746	-	-
	Lal14g1076	810	MobiDBLite	consensus disorder prediction	1	34	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal14g1076	Lal-Chr14	12960371	12963942	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal14g1076	446	575	PHD Gene Family	AT5G57380	25.191	1.59e-08	56.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal14g1076	-		-	gmx:100820216	1276.92