Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1061 ATGCTAGACAACAACAACAACAACAACGACACTGTTTCTTCTGGTGCACCATCTTCTTCTGATGCACCCTTTACATTATCTGAAAATGGTGTTTCTAACAAAAGAAAAAGAAGACCAGCAGGCACACCAGATCCAGATGCTGAGGTTGTGTCTCTCTCACCAAAGACCTTGTTAGAATCTGATAGATATGTGTGTGAGATCTGCAACCAAGGGTTTCAGAGAGACCAGAACCTTCAAATGCATAGAAGGAGGCATAAGGTGCCATGGAAGTTGTTGAAAAGAGAAACACAAGGGATGAAAAAGAAGGTTTTTGTGTGTCCAGAACCAAGTTGTTTGCACCATGATCCTTGTCATGCCCTTGGTGACCTTGTTGGAATAAAGAAGCACTTTAGAAGGAAGCATAGCAATCATAAGCAGTGGGTTTGTGACAAGTGCTCCAAAGGGTATGCAGTTCAATCTGATTACAAAGCACACATCAAAATTTGTGGCACTAGAGGCCATTCATGTGATTGTGGCCGTGTGTTTTCCAGGGTTGAGAGTTTCATAGAACATCAAGATTCCTGCACTATCAGGCATCACAGGCCAGAGTTACAAGCACTACAACCTGCATGCTCTTCTAGAACAGCTTCAAGCACAAGTCCATCTAGTGAGGCAAATTTTAGTATAGCCCCAACCAAGTTACAAGGACTAAGACTACCAAAATCAGCTGAAAAAGTTGATGATTTATTAACTTCAGAGATACACAATATGCCTAGCACCTCAAATCAGATGCATAACTTAGAACTTCAGCTACTCTTACCTTCTTCAACAAACTCTCAAGAAAAAAGAAATTCAAGTGATGAAAACTATGAGACTCATTTGAAACTTTCAATAGGTTCATGTAGTAATAATAATGACAAAGGGAGTGAGTCAGATCAGCTGCCAAGTTCACAAACACATCATAAGAATGTGAATGATATTACCACAATGGAAGTAGCAAGGTTGAAAGAGTTTGCAAATGAGGAGTTAAAGTTGGCAATGACAGAAAAGGCTTATGCTGAAGAAGCTAGAAGAGAAGCTAAAAGACTAATTCAGATAGCTGAACTTGAGTTTGAGAATGCTCAAAGGATAAGGAAACAAGCACAAAGTGAGCTTGGAAAAGCTGAAGCTTTGAAAAACCAAGCCAGCAAGAAAATGACCTCTATTGTTATGGAAATAACATGCCAAGCTTGTAAACAACAATTCCAAACTTCTACCATTCATGGTGTTCCATCAGAAGAAACATCCATTGTAATGAATAGTTATATGTCCTCAGCTACTACAGAAGGATAA 1311 0.3936 MLDNNNNNNDTVSSGAPSSSDAPFTLSENGVSNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGMKKKVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKICGTRGHSCDCGRVFSRVESFIEHQDSCTIRHHRPELQALQPACSSRTASSTSPSSEANFSIAPTKLQGLRLPKSAEKVDDLLTSEIHNMPSTSNQMHNLELQLLLPSSTNSQEKRNSSDENYETHLKLSIGSCSNNNDKGSESDQLPSSQTHHKNVNDITTMEVARLKEFANEELKLAMTEKAYAEEARREAKRLIQIAELEFENAQRIRKQAQSELGKAEALKNQASKKMTSIVMEITCQACKQQFQTSTIHGVPSEETSIVMNSYMSSATTEG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1061 436 MobiDBLite consensus disorder prediction 291 318 - -
Lal14g1061 436 MobiDBLite consensus disorder prediction 1 30 - -
Lal14g1061 436 Pfam Zinc finger, C2H2 type 63 85 IPR013087 -
Lal14g1061 436 Coils Coil 343 391 - -
Lal14g1061 436 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 436 - -
Lal14g1061 436 MobiDBLite consensus disorder prediction 202 223 - -
Lal14g1061 436 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Lal14g1061 436 MobiDBLite consensus disorder prediction 1 50 - -
Lal14g1061 436 SUPERFAMILY beta-beta-alpha zinc fingers 62 160 IPR036236 -
Lal14g1061 436 Gene3D Classic Zinc Finger 41 107 - -
Lal14g1061 436 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Lal14g1061 436 PANTHER OS03G0310200 PROTEIN 1 436 IPR039288 GO:0009630
Lal14g1061 436 MobiDBLite consensus disorder prediction 202 224 - -
Lal14g1061 436 SMART c2h2final6 63 85 IPR013087 -
Lal14g1061 436 SMART c2h2final6 104 134 IPR013087 -
Lal14g1061 436 SMART c2h2final6 140 160 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1061 Lal-Chr14 12817602 12820420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1061 1 436 C2H2 Transcription Factor Family AT2G01940 55.217 5.82e-151 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal14g1061 zf-C2H2 0.0041 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1061 K25871 - gmx:100791007 623.239