Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g1038 ATGACGGCGATCTCCTTTTCTCTTGTGCTAAGGACCACAACCCCACTGTATGGTTTGCCGACAATGGTGAACGCTTGGGCACTTATCGAGGCCATAATGGCGCTGTTTGGTGCTGCGATGTCTCAAGCAAGAGATTCGGGTCGACTGATAACTGGTAGTGCAGATCAAACGGTGAAGCTGTGGAATGTGCAAACTGGTCAGCAATTATTCACCTTCAATTTTGATTCCCCTGCTAGGTCTGTCGACTTTTCCGTCGGTGATAAGCTTGCAGTTATCACTTCTGACCCTTTTATGGAATTGACCTCTGCAATCCATGTCAAGCGCATTGCTAGAGACCCCGCTGACCAGACTGCGGAATCTGTGCTTGTCCTTAAGGGCCCACAGGGAAGAATTAATAGAGCTGTTTGGGGACCCCTCAACAGAACTATTATTAGTGGCGGAGAAGATGCTGTTATTCGCATTTGGGATGCTGAGACTGGAAAATTACTTCAAGAGTCTGACAAGGAATCTGGCCACAAGAAGACAATTACATCACTTGTAAAATCTGCAGATGGCTCACATTTCCTATCTGGCTCCCTTGATAAGTCTGCTAGGCTTTGGGATACCAGAACAATGACACTTATCAAGACATATGTGACAGAACGTCCTGTCAATGCAGTTGCAATGTCACCTCTTCTTGATCATGTGGTACTTGGAGGTGGTCAGGATGCATCAGCTGTTACAACTACTGATCATCGTGCTGGGAAATTTGAAGCCAAATTCTATGACAAGATTCTTCAAGAAGAAATCGGAGGTGTGAAAGGGCATTTTGGACCAATTAATGCACTGGCCTTTAATCCTGATGGGAAAAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTTGACCAAGATTATTTCAATATCAAACTGTAG 927 0.4498 MTAISFSLVLRTTTPLYGLPTMVNAWALIEAIMALFGAAMSQARDSGRLITGSADQTVKLWNVQTGQQLFTFNFDSPARSVDFSVGDKLAVITSDPFMELTSAIHVKRIARDPADQTAESVLVLKGPQGRINRAVWGPLNRTIISGGEDAVIRIWDAETGKLLQESDKESGHKKTITSLVKSADGSHFLSGSLDKSARLWDTRTMTLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDQDYFNIKL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g1038 308 ProSitePatterns Trp-Asp (WD) repeats signature. 49 63 IPR019775 -
Lal14g1038 308 SMART WD40_4 204 243 IPR001680 GO:0005515
Lal14g1038 308 SMART WD40_4 259 298 IPR001680 GO:0005515
Lal14g1038 308 SMART WD40_4 117 156 IPR001680 GO:0005515
Lal14g1038 308 SMART WD40_4 159 201 IPR001680 GO:0005515
Lal14g1038 308 SMART WD40_4 25 62 IPR001680 GO:0005515
Lal14g1038 308 SUPERFAMILY WD40 repeat-like 40 304 IPR036322 GO:0005515
Lal14g1038 308 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 296 - -
Lal14g1038 308 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 43 307 - -
Lal14g1038 308 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 210 IPR001680 GO:0005515
Lal14g1038 308 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 165 IPR001680 GO:0005515
Lal14g1038 308 Pfam WD domain, G-beta repeat 170 201 IPR001680 GO:0005515
Lal14g1038 308 Pfam WD domain, G-beta repeat 122 156 IPR001680 GO:0005515
Lal14g1038 308 Pfam WD domain, G-beta repeat 265 296 IPR001680 GO:0005515
Lal14g1038 308 Pfam WD domain, G-beta repeat 46 62 IPR001680 GO:0005515
Lal14g1038 308 PRINTS G protein beta WD-40 repeat signature 49 63 IPR020472 -
Lal14g1038 308 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Lal14g1038 308 PRINTS G protein beta WD-40 repeat signature 188 202 IPR020472 -
Lal14g1038 308 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 161 - -
Lal14g1038 308 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 43 307 - -
Lal14g1038 308 ProSitePatterns Trp-Asp (WD) repeats signature. 143 157 IPR019775 -
Lal14g1038 308 ProSiteProfiles Trp-Asp (WD) repeats profile. 45 71 IPR001680 GO:0005515
Lal14g1038 308 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 169 204 - -
Lal14g1038 308 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 296 IPR001680 GO:0005515
Lal14g1038 308 Gene3D - 35 308 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g1038 Lal-Chr14 12644679 12647863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g1038 43 308 Eukaryotic Initiation Factors Gene Family AT2G46290 79.104 1.39e-157 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g1038 K03246 - gmx:100793485 506.523