Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0924 ATGTCGAAATTTATAATGTCAGATGCGGATGAATATCGTTGTTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATGCATTTGATAAGTTTGGCAAGCTTATTGAGGCAAAGGTGGTTGTTGACAAACTCTCTGGGCGATCTCGTGGTTTCGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGAATGGATTTAGATGGCCGAACTATTACTGTTGATAAAGCTCAGCCTCAACAGGGATCAGCTAGAGATGATGGTGATCGTGACCGAGGCCGTGACCGAGGCCGTGATCGTGGTCGTGATCGCGATTATGGAGGTGGTCGAGGATCTAATGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCTAGAGAGTGCCCTAGTGAAGGGGAAAGAGGAGGAAGGTATGGTGGCAGGGAAAGTAAATATGGCGGAAGCAGTGCTGGTGGTCGCTATGGTCCTGATAGAAATGGTGATCGTTCGTCTGGTGGGCGCAACAGGGATGCTGGTAGTCGTGGAGATTCTGGAAATGATAGGCATCATCGTGATCGTGATCGTGCTGGGCCATATGAACGACACTGA 627 0.4641 MSKFIMSDADEYRCFIGGLAWSTSDRKLKDAFDKFGKLIEAKVVVDKLSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDKAQPQQGSARDDGDRDRGRDRGRDRGRDRDYGGGRGSNGGECFKCGKPGHFARECPSEGERGGRYGGRESKYGGSSAGGRYGPDRNGDRSSGGRNRDAGSRGDSGNDRHHRDRDRAGPYERH 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0924 208 SUPERFAMILY Retrovirus zinc finger-like domains 110 147 IPR036875 GO:0003676|GO:0008270
Lal14g0924 208 Gene3D - 124 194 - -
Lal14g0924 208 SMART rrm1_1 13 86 IPR000504 GO:0003723
Lal14g0924 208 MobiDBLite consensus disorder prediction 93 120 - -
Lal14g0924 208 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 84 IPR000504 GO:0003723
Lal14g0924 208 ProSiteProfiles Zinc finger CCHC-type profile. 128 143 IPR001878 GO:0003676|GO:0008270
Lal14g0924 208 MobiDBLite consensus disorder prediction 82 208 - -
Lal14g0924 208 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Lal14g0924 208 MobiDBLite consensus disorder prediction 133 153 - -
Lal14g0924 208 MobiDBLite consensus disorder prediction 173 208 - -
Lal14g0924 208 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 6 174 - -
Lal14g0924 208 SUPERFAMILY RNA-binding domain, RBD 9 122 IPR035979 GO:0003676
Lal14g0924 208 SMART c2hcfinal6 127 143 IPR001878 GO:0003676|GO:0008270
Lal14g0924 208 Gene3D - 6 123 IPR012677 -
Lal14g0924 208 Pfam Zinc knuckle 127 143 IPR001878 GO:0003676|GO:0008270
Lal14g0924 208 PANTHER TRANSFORMER-2-RELATED 6 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0924 Lal-Chr14 11624449 11628390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0924 15 98 Eukaryotic Initiation Factors Gene Family AT1G22760 35.714 1.41e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0924 - - gmx:100815224 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0924 14 11624449 11628390 Lal19g0205 19 1893069 1897271 LSH