Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0886 ATGGAAGCAAGAGAAGGCATAAGTTGTGGGGTTACAGTGATAGGTGCAGAAGCTCCATCAGCTTATCATGTGGCACCAAGGAGTGAAGCTCCTAACCAGGTTCATGTCCCTGATGCAGCAGCTGCTGTCGTTGCTGCTGGTGTCGTCTCACCGGTGAGTGTGGGGTTGGATGGAACAACAATTAAGAAAAAACGCGGTAGACCAAGGAAATATGGGCCAGATGGGTCAGTTAATACTATGGTGTTGTCACCAATGCCAATCTCATCTTCAGGTCCACATTCCAATGACTTTTCATCCGGGAAGCGGGGAAAGTTGGGTGGCATGGAATGCAGGCAGTCAAAAAAAGTTGGGCTGGATCATCTAGGTGACTTCAATGCATGCTCCGACGGTACAAACTTTATGCCGCATTTCATCACCGTCAATGCTGGAGAGGATATTACAATGAAGGTTATATCCTTTTCCCAACAAGGGCCTCGGGCTATATGCATCTTATCTGCTAATGGTGCTATTTCTAATGTTACACTTCGTCAGCACGATTCTTCCGGGGGTACTTTGACCTACGAGGGTCGTTTTGAGATACTTTCATTGTCTGGATCGTTCATGCCTACTGACAACCAAGGAACAAGAAGCAGGTCGGGCGGGATGAGTGTCTCGTTAGCAAGCCCCGATGGTCGTGTTGTAGGTGGCGGTGTTGCTGGTCTTCTTGTCGCTGCTGGTCCTGTGCAGGTGTTGGTAGGGAGTTTTCTACCGAGCAACCAGCAGGATCAGAAACCGAAGAAGCCGAAATCGGATTATGCGCCGACTCCCGTAACTGAAGCCATTGCTGTGTCTTCTGCACCACCCTCAGTTAATGCTGAAAAAGATGTCGTGGGTGGACATGTACTGCAAAATTCCGGAATCCTCAATTCAAGCCTTACTCCACCCTCTGCTTTTAGAAGAGAAAACTGGGTTAACATGCACACTATGACGGACTCAAGAAAGTCAGCAACTGACATTAACATATCATTGCCTGATAGTTAA 1020 0.4794 MEAREGISCGVTVIGAEAPSAYHVAPRSEAPNQVHVPDAAAAVVAAGVVSPVSVGLDGTTIKKKRGRPRKYGPDGSVNTMVLSPMPISSSGPHSNDFSSGKRGKLGGMECRQSKKVGLDHLGDFNACSDGTNFMPHFITVNAGEDITMKVISFSQQGPRAICILSANGAISNVTLRQHDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAAGPVQVLVGSFLPSNQQDQKPKKPKSDYAPTPVTEAIAVSSAPPSVNAEKDVVGGHVLQNSGILNSSLTPPSAFRRENWVNMHTMTDSRKSATDINISLPDS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0886 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 248 IPR005175 -
Lal14g0886 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 133 252 - -
Lal14g0886 339 ProSiteProfiles PPC domain profile profile. 130 271 IPR005175 -
Lal14g0886 339 Gene3D - 135 265 - -
Lal14g0886 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 338 IPR039605 GO:0003680
Lal14g0886 339 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 338 - -
Lal14g0886 339 CDD DUF296 135 225 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0886 Lal-Chr14 11228481 11233314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0886 10 279 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 56.856 2.05e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0886 - - gmx:100793726 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0886 14 11228481 11233314 Lal7g0165 7 1948081 1954169 LSH
Lal14g0886 14 11228481 11233314 Lal19g0235 19 2315511 2319820 LSH
Lal9g1736 9 19564912 19573499 Lal14g0886 14 11228481 11233314 PCT
Lal14g0886 14 11228481 11233314 Lal9g1736 9 19564912 19573499 PCT