Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0885 ATGGGTCGTAGAAAGATTGAGATTAAGTTGGTGAAAGACAACAACACAAGACAAGTAACATTCTCAAAACGTAGAACAGGTTTATTCAAAAAAGCAAATGAATTATCCATTTTGTGTGGTGTTGAAATTGCCATTATTGTCTTCTCACCAGGTAATAGACCTTACTCTTTTGGGCACCCTGATGTTGATGTTGTTGTAGCCAAGTTTCTTCAACAAGAGCCTAAATCAAATGGGGTACGAGGTTGTTCTTCAAACTTGGATAAACTGCACCAACAACTTGGTAATGTTATGGAACAATTACGTGAAGTTGAAGAGAAAAGTGAGGTTCTTGATGAAACCCTAAATCAATACAAGTATGAATTTGAGGAGCTTCAAGAACTGCATGATTTATTAGTAGAGTTTAAGGATGATGTAAAGCAACGTGTTGAAGAAATGGAAGTGGTGGAAACTATGTTAATGCTTAAAGAACAACGTGTGGATTTTGAAGAAAATCATGTTCCTAATAAGAGAATAAGAAAAGATTGA 525 0.3524 MGRRKIEIKLVKDNNTRQVTFSKRRTGLFKKANELSILCGVEIAIIVFSPGNRPYSFGHPDVDVVVAKFLQQEPKSNGVRGCSSNLDKLHQQLGNVMEQLREVEEKSEVLDETLNQYKYEFEELQELHDLLVEFKDDVKQRVEEMEVVETMLMLKEQRVDFEENHVPNKRIRKD 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0885 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Lal14g0885 174 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal14g0885 174 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal14g0885 174 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal14g0885 174 CDD MADS 2 60 - -
Lal14g0885 174 PANTHER MADS BOX PROTEIN 2 161 - -
Lal14g0885 174 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal14g0885 174 Coils Coil 86 127 - -
Lal14g0885 174 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 161 - -
Lal14g0885 174 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal14g0885 174 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Lal14g0885 174 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0885 Lal-Chr14 11225773 11226297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0885 1 154 Type I MADS-box Gene Family AT2G34440 39.053 6.72e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal14g0885 SRF-TF 5.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0885 - - gmx:100790601 171.4