Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0825 ATGGAGAAACACAAATGCAAGCTATGTTTTAGGAACTTTTCCAATGGAAAAGCCTTAGGGGGTCACATGAGGTCTCATATGATAAACCTACATGTCCCTCCTAAACCAAATAAGTTATTAACATCATCATCACCATCATCGTCATCAATTGTTTGTCTCGGTCTTGAAGCCGAGTTATCCTCGTCTCCTTCGTCATCCTCATTTGAACATAACAAATTTCTCAACTACAGGCTCACAGAGAATCCGAAGCGAAACTTTCGACTCTCGAGCCCTGAATTTGTAGATACAGACTATGTCAACCTTCAAGATAGAGAGAGCGAGACCAAGCCATCAAGAAATCCAACTCGGAGACGATCTAAGAGACCATGGAAACTCGGTTTCCTCAATCAACAACAATTTAGTAAGAAAATCAAGTTTAGTGTAGAATCTCAAAAGAACGAATCTTTGAGTTCGGTTTCAGAAACGATCACAGAAGATGATGTTGCTTTTTGTCTCATGATGTTGTCTCGTGACGAGTGGAAGAGACAACAAGAATTCTACGACGAAGAAGAACTAGTAGATGAAGATGAAGAGAGTTATGAATCTGAAGAAGAGATGAAATCATCAAAGACAACAACAATGACAATGGTACAAGGTAGATACAAATGTGAAACATGCAACAAGGTGCTTAGGTCTTATCAAGCATTGGGTGGACATAGAGCAAGTCACAAGAAGATCAAGGTCATAGAACAAGAACAACCAAAATTGGAGCATCATGACAATAAGAAAATCCATCAATGTCCGGTTTGCTTTCGGATTTTCGCTTCCGGTCAAGCCCTTGGTGGACATAGGAGAACACATATTATTGGTTCATTAGATACCACAATAACCGCAACCGTAACTGCAATCCCAATTCCGAGTTTTGCCAAGTTCGAAGATAGTTTGATAGATCTTAACCTCCCCACTCCCATAGCTGATGATGAAATTGAGGACTCTGCAGTTTCTGATGCAGAATTTGTCAAATCCCATTATATTAGAAAGCTTCTAACTGTAATTCAGGTTAGGGACATCATACAATAA 1059 0.3957 MEKHKCKLCFRNFSNGKALGGHMRSHMINLHVPPKPNKLLTSSSPSSSSIVCLGLEAELSSSPSSSSFEHNKFLNYRLTENPKRNFRLSSPEFVDTDYVNLQDRESETKPSRNPTRRRSKRPWKLGFLNQQQFSKKIKFSVESQKNESLSSVSETITEDDVAFCLMMLSRDEWKRQQEFYDEEELVDEDEESYESEEEMKSSKTTTMTMVQGRYKCETCNKVLRSYQALGGHRASHKKIKVIEQEQPKLEHHDNKKIHQCPVCFRIFASGQALGGHRRTHIIGSLDTTITATVTAIPIPSFAKFEDSLIDLNLPTPIADDEIEDSAVSDAEFVKSHYIRKLLTVIQVRDIIQ 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0825 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 36 IPR013087 -
Lal14g0825 352 MobiDBLite consensus disorder prediction 100 121 - -
Lal14g0825 352 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Lal14g0825 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Lal14g0825 352 ProSitePatterns Zinc finger C2H2 type domain signature. 260 280 IPR013087 -
Lal14g0825 352 SUPERFAMILY beta-beta-alpha zinc fingers 254 281 IPR036236 -
Lal14g0825 352 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Lal14g0825 352 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 334 - -
Lal14g0825 352 SUPERFAMILY beta-beta-alpha zinc fingers 3 236 IPR036236 -
Lal14g0825 352 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 334 IPR044303 GO:0006355
Lal14g0825 352 Pfam C2H2-type zinc finger 213 238 - -
Lal14g0825 352 Pfam C2H2-type zinc finger 4 27 - -
Lal14g0825 352 Pfam C2H2-type zinc finger 258 280 - -
Lal14g0825 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 280 IPR013087 -
Lal14g0825 352 Gene3D Classic Zinc Finger 211 280 - -
Lal14g0825 352 SMART c2h2final6 214 236 IPR013087 -
Lal14g0825 352 SMART c2h2final6 4 26 IPR013087 -
Lal14g0825 352 SMART c2h2final6 258 280 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0825 Lal-Chr14 10417298 10418933 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0825 1 322 C2H2 Transcription Factor Family AT3G60580 42.643 1.09e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal14g0825 zf-C2H2_6 6.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0825 - - aprc:113850450 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0825 14 10417298 10418933 Lal14g0825 14 10417298 10418933 ECH
Lal9g1348 9 14951023 14952252 Lal14g0825 14 10417298 10418933 ECH
Lal14g0825 14 10417298 10418933 Lal19g0276 19 2786060 2787091 LSH
Lal9g1348 9 14951023 14952252 Lal14g0825 14 10417298 10418933 PCT
Lal14g0825 14 10417298 10418933 Lal9g1348 9 14951023 14952252 PCT