Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0711 ATGGCTAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAGCATTGGATGCTTGACAAGCTTGGCGGTGCCTTTGCACCCAAGCCATCATCTGGACCCCACAAATCAAGGGAATGCTTGCCTTTGATCCTCATCTTGCGAAACAGGTTAAAGTATGCTTTAACATACAGAGAAGTTATTGCAATCTTGATGCAGCGCCATATTCTTGTTGATGGAAAGGTTAGGACAGACAAGACATACCCTTCTGGCTTCATGGATGTTGTCTCTATTCCCAAAACAAACGAGAACTTCCGTCTCCTCTATGATACAAAGGGTCGTTTCCGTCTCCACTCTGTCAGGGATGATGAGGCAAAGTTCAAGCTATGCAAGGTTCGTTCAATTCAATTTGGTCAGAAGGGCATCCCATATTTGAACACCTATGATGGTCGCACCATCCGTTATCCAGATCCACTAATTAAGGCTAATGACACCATCAAACTGGACCTCGAAAGTAACAAGATAACCGATTTTATCAAGTTTGATGTCGGGAATGTTGTCATGGTTACCGGAGGAAGGAACAGAGGCCGTGTTGGTGTCATCAAGAACAGAGAGAAGCATAAGGGAAGTTTTGAGACTGTCCACATCCAGGATGCAACTGGTCATGAATTTGCCACTCGACTCGGAAATGTCTTCACTATTGGCAAAGGGACAAAGTCTTGGGTGTCTCTTCCCAAAGGCAAAGGTATTAAGTTGTCTATCATTGAGGAGGCTAGAAAAAGGCTTGCAGCTCAAAATGTTACAGCTGCTTAA 795 0.444 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHILVDGKVRTDKTYPSGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETVHIQDATGHEFATRLGNVFTIGKGTKSWVSLPKGKGIKLSIIEEARKRLAAQNVTAA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0711 264 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Lal14g0711 264 CDD KOW_RPS4 175 229 IPR041982 -
Lal14g0711 264 Pfam KOW motif 177 210 IPR005824 -
Lal14g0711 264 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
Lal14g0711 264 Hamap 30S ribosomal protein S4e [rps4e]. 7 238 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal14g0711 264 SMART kow_9 174 201 IPR005824 -
Lal14g0711 264 Pfam S4 domain 47 90 IPR002942 GO:0003723
Lal14g0711 264 SMART s4_6 42 106 IPR002942 GO:0003723
Lal14g0711 264 Pfam Ribosomal family S4e 95 169 IPR013845 -
Lal14g0711 264 PANTHER 40S RIBOSOMAL PROTEIN S4 2 220 - -
Lal14g0711 264 PANTHER 40S RIBOSOMAL PROTEIN S4 221 264 - -
Lal14g0711 264 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 220 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal14g0711 264 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 221 264 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal14g0711 264 Gene3D - 175 245 IPR014722 -
Lal14g0711 264 CDD S4 51 112 - -
Lal14g0711 264 Pfam 40S ribosomal protein S4 C-terminus 212 259 IPR032277 -
Lal14g0711 264 PIRSF RPS4a_RPS4e 1 241 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lal14g0711 264 Gene3D - 1 117 IPR036986 GO:0003723
Lal14g0711 264 Gene3D - 122 172 IPR038237 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0711 Lal-Chr14 8450875 8453231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0711 1 262 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.985 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0711 K02987 - gmx:100801792 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0711 14 8450875 8453231 Lal6g0225 6 1496375 1498587 ECH
Lal14g0711 14 8450875 8453231 Lal18g1391 18 16184292 16187242 ECH
Lal14g0711 14 8450875 8453231 Lal22g0214 22 1318899 1321025 ECH
Lal14g0711 14 8450875 8453231 Lal14g0711 14 8450875 8453231 ECH