Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0656 ATGTCACGTTACAGAGGGCCTCGTTTCAAACAAATACGCCGTCTGGGAGTTTTACCAGGACTAACTAGTAAAAGGCCCGCAGCTATAGTCGGAAGCGAACTTAGAAACCAATCGCGCTCCAGTAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACAACAATTGCTTAAATACGTTCGTATCGCCGGAAAAGCGAAGGGGTCAACAGGTGAGGTGTTACTACAATTACTTGAAATGCGTTTGGACAACATACTTTTTCGATTGGGTATGGTTTCAACTATTCCTCAAGCCCGCCAATTAGTTAACCATAGACATGTTTTAGTTAATGGTCGTATGGTTAATATACCAAGTTATCGCTGTAAACCCCAAGATATCATTACAACGAAGGATGAACCAAAATCTAGAGCTTTGATTCAAAATGATCTTGATTCAGCCCCTCGTGACGAGTTGCCAGCCCAT 495 0.404 MSRYRGPRFKQIRRLGVLPGLTSKRPAAIVGSELRNQSRSSKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGEVLLQLLEMRLDNILFRLGMVSTIPQARQLVNHRHVLVNGRMVNIPSYRCKPQDIITTKDEPKSRALIQNDLDSAPRDELPAH 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0656 165 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 3 89 - -
Lal14g0656 165 CDD S4 91 155 - -
Lal14g0656 165 SMART Ribosomal_S4_2 3 90 IPR001912 GO:0019843
Lal14g0656 165 PANTHER 30S 40S RIBOSOMAL PROTEIN 1 165 IPR022801 -
Lal14g0656 165 SMART s4_6 91 155 IPR002942 GO:0003723
Lal14g0656 165 PANTHER 30S RIBOSOMAL PROTEIN S4, CHLOROPLASTIC 1 165 - -
Lal14g0656 165 Pfam S4 domain 91 138 IPR002942 GO:0003723
Lal14g0656 165 Hamap 30S ribosomal protein S4 [rpsD]. 1 165 IPR005709 GO:0003735|GO:0006412|GO:0015935
Lal14g0656 165 Pfam Ribosomal protein S4/S9 N-terminal domain 3 90 IPR001912 GO:0019843
Lal14g0656 165 ProSitePatterns Ribosomal protein S4 signature. 89 113 IPR018079 GO:0019843
Lal14g0656 165 Gene3D - 90 165 IPR036986 GO:0003723
Lal14g0656 165 ProSiteProfiles S4 RNA-binding domain profile. 91 152 - -
Lal14g0656 165 SUPERFAMILY Alpha-L RNA-binding motif 3 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0656 Lal-Chr14 7748455 7748949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0656 87 130 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 45.455 1.34e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0656 K02986 - jre:26380876 288.885