Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0601 ATGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCCCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCCTTTTGCTCCTCAGCCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCGTCCGCCACTGGAAACACCACTTCCCGTCCGACTTGCATGTACAAAGCTGATTCGGAATTCTCTTTCATTCCAAGGCAGAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCCCCCCCCGCTCCCGTCAATCCCACTAGCCTCTTATCACTCTCCATTCTCATTCGATCACGGCATCAAACAAAATAGAAAAACTCACATTGGATTTAGGGGTAATCAGGCTCGAACTGATGACTTACACCGTGTCAAGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCAAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCCGGTATTGGTCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGGAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG 807 0.4994 MTRRPSTSTRHCSESGPCLSPSVADHPLGPATDHRLGKLLPHQLANQTRAPPRADSSFCSSAYGVLAAVSSCCSPPKGRFLRVTHPSATGNTTSRPTCMYKADSEFSFIPRQNLYPCASYSPGVRSQKYSPPPLPSIPLASYHSPFSFDHGIKQNRKTHIGFRGNQARTDDLHRVKSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0601 268 CDD Ribosomal_S12 189 260 IPR005679 GO:0003735|GO:0006412|GO:0015935
Lal14g0601 268 Gene3D - 150 267 IPR012340 -
Lal14g0601 268 SUPERFAMILY Nucleic acid-binding proteins 185 265 IPR012340 -
Lal14g0601 268 MobiDBLite consensus disorder prediction 1 30 - -
Lal14g0601 268 Pfam Ribosomal protein S12/S23 183 263 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lal14g0601 268 TIGRFAM rpsL_bact: ribosomal protein uS12 177 265 IPR005679 GO:0003735|GO:0006412|GO:0015935
Lal14g0601 268 MobiDBLite consensus disorder prediction 1 16 - -
Lal14g0601 268 ProSitePatterns Ribosomal protein S12 signature. 193 200 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lal14g0601 268 PANTHER 30S RIBOSOMAL PROTEIN S12-B 170 267 - -
Lal14g0601 268 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 170 267 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lal14g0601 268 PRINTS Ribosomal protein S12 signature 192 207 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lal14g0601 268 PRINTS Ribosomal protein S12 signature 208 227 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lal14g0601 268 PRINTS Ribosomal protein S12 signature 227 244 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lal14g0601 268 PRINTS Ribosomal protein S12 signature 244 260 IPR006032 GO:0003735|GO:0005840|GO:0006412
Lal14g0601 268 PRINTS Ribosomal protein S12 signature 260 268 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0601 Lal-Chr14 7612193 7615005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0601 153 249 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 36.190 3.11e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0601 K02950 - twl:119992788 181.415