Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0584 ATGTCACGTTACAGAGGGCCTCGTTTCAAACAAATACGCCGTCTGGGAGTTTTACCAGGACTAACTAGTAAAAGGCCCGCAGCTATAGTCGGAAGCGAACTTAGAAACCAATCGCGCTCCAGTAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACAACAATTGCTTAAATACGTTCGTATCGCCGGAAAAGCGAAGGGGTCAACAGGTGAGGTGTTACTACAATTACTTGAAATGCGTTTGGACAACATACTTTTTCGATTGGGTATGGTTTCAACTATTCCTCAAGCCCGCCAATTAGTTAACCATAGACATGTTTTAGTTAATGGTCGTATGGTTAATATACCAAGTTATCGCTGTAAACCCCAAGATATCATTACAACGAAGGATGAACCAAAATCTAGAGCTTTGATTCAAAATGATCTTGATTCAGCCCCTCGTGACGAGTTGCCAGCCCATTTGACTCTTCATCCATTCCAATATAAAGGATTAGTCAATCAAATAATAGATAATAAATGGGTTGGTTTGAAAATAAATGAATTGCTGGTTGTAGAATATTATTCTCGTCAGGCTTAA 612 0.3824 MSRYRGPRFKQIRRLGVLPGLTSKRPAAIVGSELRNQSRSSKKSQYRIRLEEKQKLRFHYGLTEQQLLKYVRIAGKAKGSTGEVLLQLLEMRLDNILFRLGMVSTIPQARQLVNHRHVLVNGRMVNIPSYRCKPQDIITTKDEPKSRALIQNDLDSAPRDELPAHLTLHPFQYKGLVNQIIDNKWVGLKINELLVVEYYSRQA 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0584 203 Hamap 30S ribosomal protein S4 [rpsD]. 1 201 IPR005709 GO:0003735|GO:0006412|GO:0015935
Lal14g0584 203 CDD S4 91 155 - -
Lal14g0584 203 SMART Ribosomal_S4_2 3 90 IPR001912 GO:0019843
Lal14g0584 203 SMART s4_6 91 155 IPR002942 GO:0003723
Lal14g0584 203 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 3 201 - -
Lal14g0584 203 PANTHER 30S 40S RIBOSOMAL PROTEIN 1 202 IPR022801 -
Lal14g0584 203 TIGRFAM rpsD_bact: ribosomal protein uS4 3 201 IPR005709 GO:0003735|GO:0006412|GO:0015935
Lal14g0584 203 Pfam Ribosomal protein S4/S9 N-terminal domain 3 90 IPR001912 GO:0019843
Lal14g0584 203 ProSitePatterns Ribosomal protein S4 signature. 89 113 IPR018079 GO:0019843
Lal14g0584 203 Gene3D - 90 186 IPR036986 GO:0003723
Lal14g0584 203 SUPERFAMILY Alpha-L RNA-binding motif 3 201 - -
Lal14g0584 203 Pfam S4 domain 91 138 IPR002942 GO:0003723
Lal14g0584 203 PANTHER 30S RIBOSOMAL PROTEIN S4, CHLOROPLASTIC 1 202 - -
Lal14g0584 203 ProSiteProfiles S4 RNA-binding domain profile. 91 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0584 Lal-Chr14 7584667 7585278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0584 88 130 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 46.512 2.24e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0584 K02986 - jre:26380876 362.073