Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0515 ATGAGCAAAAATACTACCACTTCGGATCCCAAGTTTTCTGCGTTTCAAAAAGAAAACCCGGGACGTATCGCCCAAATAATTGGTCCGGTACTGGATGTATCTTTTCCCCCGGGGAAGATGCCGAATATTTACAACGCTCTGATAGTTAAGGGACAAGATACTGTTGGTCAACAAATTAACATTACTTGTGAAGTACAGCAATTATTAGGAAATAATCGAATCAGAGCTGTAGCTATGAGTGCTACAGAGGGTCTAATGAGAGGAATGGAAGTGATTGACACAGGGGCTCCTCTAAGTGTTCCAGTCGGCGGAGCAACTCTAGGACGCATTTTCAACGTGCTTGGAGAGCCTATTGACAATTTAGGTCCTGTAGATACTCGCACAACATCTCCTATTCATCGATCCGCACCTGCCTTTATACAATTAGATACAAAATTATCCATTTTTGAAACAGGGATTAAAGTAGTCGATCTTTTAGCTCCCTATCGCCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGAGTGGGTAAAACAGTACTCATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGGGGTGTATCTGTTTTTGGCGGAGTAGGTGAACGTACTCGTGAGGGAAATGATCTTTACATGGAAATGAAAGAATCTGGAGTAATTAATGAACAAAATATTGCAGAATCAAAAGTGGCTCTAGTCTACGGTCAAATGAATGAACCGCCTGGAGCTCGTATGAGAGTTGGGTTAACTGCCCTAACTATGGCGGAATATTTCCGGGATGTCAATGAACAAGACGTACTTCTATTTATCGACAATATCTTCCGTTTCGTTCAAGCAGGATCCGAAGTATCTGCTTTATTGGGTAGAATGCCTTCTGCTGTGGGTTATCAACCCACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCTGCGGACGATTTGACCGATCCTGCTCCTGCCACGACATTTGCACATCTCGATGCCACTACCGTACTATCAAGAGGATTAGCTGCCAAAGGTATCTATCCAGCAGTAGATCCTTTAGATTCAACGTCAACTATGCTCCAACCTAGGATCGTTGGCGAAGAACATTATGAAACTGCCCAAAGAGTTAAACAAACCTTACAGCGTTACAAAGAACTTCAGGACATTATAGCTATCCTTGGGTTGGACGAATTATCCGAAGAGGATCGCTTAACCGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAGCCCTTTTTTGTAGCAGAAGTATTTACCGGTTCACCGGGGAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAACTGATTCTTTCTGGAGAGTTAGATGGTCTTCCCGAACAGGCCTTTTATTTAGTAGGCTACGAACTTAGAAAAGGAGAGCAAATTGAAGAAATGACTTTAAATCTTTGTGTATTGACCCCAAATCGAATTGTTTGGGATTCAGAAGTGAAGGAAATTATTTTATGTACTAATAGTGGACAAATTGGAGTATTACCCAATCATGCGCCTATTGCCACAGCTGTAGATATAGGTATTTTGAGAATACGCCGTAATGACCAATGGTTAACGATGGCTCTGATGGGCGGTTTTGCTAGAATAGGCAATAATGAAATCACTATTTTAGTAAATGATGCGGAAAAGGGTAGTGATATTGATCCACAAGAAGCCCAACAAACCCTTGAAATAGCCGAAGCTAACTTGAGTAAAGCTGAAGGCAAAAGAAAAACAATTGAGGCAAATCTAGCTCTCAGACGAGCTAGAACACGAGTGGAGGCTATCAATATTATTGCGTAA 1869 0.4136 MSKNTTTSDPKFSAFQKENPGRIAQIIGPVLDVSFPPGKMPNIYNALIVKGQDTVGQQINITCEVQQLLGNNRIRAVAMSATEGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPIDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGYELRKGEQIEEMTLNLCVLTPNRIVWDSEVKEIILCTNSGQIGVLPNHAPIATAVDIGILRIRRNDQWLTMALMGGFARIGNNEITILVNDAEKGSDIDPQEAQQTLEIAEANLSKAEGKRKTIEANLALRRARTRVEAINIIA 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0515 622 TIGRFAM atpD: ATP synthase F1, beta subunit 21 478 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lal14g0515 622 Gene3D - 18 97 - -
Lal14g0515 622 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 152 372 IPR000194 GO:0005524
Lal14g0515 622 Coils Coil 585 605 - -
Lal14g0515 622 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 20 97 IPR036121 GO:0046034|GO:1902600
Lal14g0515 622 Pfam ATP synthase, Delta/Epsilon chain, long alpha-helix domain 575 618 IPR020547 -
Lal14g0515 622 Hamap ATP synthase epsilon chain [atpC]. 490 617 IPR001469 GO:0015986|GO:0045261|GO:0046933
Lal14g0515 622 Pfam ATP synthase alpha/beta family, beta-barrel domain 23 95 IPR004100 GO:0046034|GO:1902600
Lal14g0515 622 CDD ATP-synt_F1_beta_C 379 478 - -
Lal14g0515 622 CDD F1-ATPase_delta 492 612 IPR001469 GO:0015986|GO:0045261|GO:0046933
Lal14g0515 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 377 IPR027417 -
Lal14g0515 622 ProSitePatterns ATP synthase alpha and beta subunits signature. 363 372 IPR020003 GO:0005524
Lal14g0515 622 Gene3D - 98 374 IPR027417 -
Lal14g0515 622 CDD ATP-synt_F1_beta_N 19 98 - -
Lal14g0515 622 Gene3D - 578 622 - -
Lal14g0515 622 Gene3D - 375 491 IPR024034 -
Lal14g0515 622 TIGRFAM ATP_synt_epsi: ATP synthase F1, epsilon subunit 491 619 IPR001469 GO:0015986|GO:0045261|GO:0046933
Lal14g0515 622 CDD F1-ATPase_beta 97 377 - -
Lal14g0515 622 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 490 571 IPR036771 -
Lal14g0515 622 Gene3D - 492 576 IPR036771 -
Lal14g0515 622 Hamap ATP synthase subunit beta [atpB]. 18 490 IPR005722 GO:0015986|GO:0045261|GO:0046933
Lal14g0515 622 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 375 486 - -
Lal14g0515 622 SMART AAA_5 164 356 IPR003593 -
Lal14g0515 622 PANTHER F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT 1 483 - -
Lal14g0515 622 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 492 570 IPR020546 GO:0015986
Lal14g0515 622 PANTHER ATP SYNTHASE 1 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0515 Lal-Chr14 7439220 7441114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0515 94 429 Primary Pumps ATPases(2) AT1G20260 27.049 9.06e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0515 K02112 - han:118484095 1070.84