Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0422 ATGGATAGCGAAGGAAGCAGAAGATTAACTACAAATGATGCTTTATTATATCTTAAAGAAATAAAGACCGTATTTACTGAAGACATGGAAAAGTATGAATACTTTTTGAAAATATTGATAGACTTCAAAGAAAATAGAATTGGTAGAAATGATGTTATAGAAGCTGCCAAGGATTTATTCAAAGGACATGATCATCTACTGTTGGGGTTAAACAACTTTCTTCCAAGGGGTTATGAAATCCAACTTCCGTTAGTAAATGAAGAATCATCTGAGCCAGTTCTTGGAATTCAAGATCCAACCGATTTCAAGAATAAGTTTAAGGTAAAAATGTTGTTGAATCTAAGACAGTTTTTATATGTCTCTCTACACATATACTAA 378 0.3148 MDSEGSRRLTTNDALLYLKEIKTVFTEDMEKYEYFLKILIDFKENRIGRNDVIEAAKDLFKGHDHLLLGLNNFLPRGYEIQLPLVNEESSEPVLGIQDPTDFKNKFKVKMLLNLRQFLYVSLHIY 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0422 125 Pfam Paired amphipathic helix repeat 30 74 IPR003822 GO:0006355
Lal14g0422 125 PANTHER SIN3B-RELATED 5 103 IPR039774 GO:0003714
Lal14g0422 125 SUPERFAMILY PAH2 domain 7 76 IPR036600 GO:0006355
Lal14g0422 125 Gene3D Paired amphipathic helix 13 75 IPR036600 GO:0006355
Lal14g0422 125 ProSiteProfiles PAH domain profile. 7 77 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0422 Lal-Chr14 6049202 6049672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0422 9 82 WRKY Transcription Factor Family AT4G12020 51.351 7.61e-17 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal14g0422 PAH 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0422 K11644 - lang:109341642 146.747