Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0187 ATGGGTCCGAATGGTGGTGCTCTATCAGCGGCGGCGAAACAGGCGGAGCGGTTGAGAATAGACGGCAACACTTACTTCAGCAAACAACGTTTTGCTGCTGCAATTGATGCATACACCGAGGCAATTACACTTTGCCCAAATGTTCCGGTGTATTGGACGAATCGCGCTTTGTGCCATCTTAAACGCAATGATTGGGAGAGAGTAGAAGAAGATTGTCGGAAAGCAATTCAGTTGGAGAGCAATTTGGTTAAGGCCCACTATATGTTGGGACTTGCATTGCTAAATCGAGGGGAATATGCCAAGGGAATCAGAGAATTGCAGAAGGCTTTGGATCTTGGAAGAGGTGCTGATCCCAATGGATATATGGTAGAAAAAATATGGCAAGAGCTTGCAAAAGCAAAGTACCTAGAGTGGGAACGTTCGTCGAGCAAGCGATCCTGGGAATTGCAGAACTTAAAAGAAGCTTGTGAGTCTGCTCTAAAGGAGAAACATTTTCTCGATGCGCCCCAAATTGAAGGATTTGTAGATGCTACTGCTACCCCTACCCATATGGAACAATTAGAGGCTTTAGAAAAGGTCTTCAATAAAGCTGCAGAGGATGACATACCAACTGAGATACCAGATTATCTGTGCTGTAAAATTACACTTGATATTTTTCATGATCCGGTAATTACTCCGAGCGGACATACGTACGAGAGGGCAGTGATTATTGAGCATCTGCAGAAGGTTGGTAAGTTTGACCCCTTCACGCGACAACCACTTCAAATATCGCAGCTAGTACCGAACTTGGCAATTAAAGAAGCAGTGCAGGCATTTTTGGACAAACATGGGTGGGCCTACAAGGTAGATTAA 852 0.4472 MGPNGGALSAAAKQAERLRIDGNTYFSKQRFAAAIDAYTEAITLCPNVPVYWTNRALCHLKRNDWERVEEDCRKAIQLESNLVKAHYMLGLALLNRGEYAKGIRELQKALDLGRGADPNGYMVEKIWQELAKAKYLEWERSSSKRSWELQNLKEACESALKEKHFLDAPQIEGFVDATATPTHMEQLEALEKVFNKAAEDDIPTEIPDYLCCKITLDIFHDPVITPSGHTYERAVIIEHLQKVGKFDPFTRQPLQISQLVPNLAIKEAVQAFLDKHGWAYKVD 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0187 283 CDD RING-Ubox_CHIP 206 272 IPR045202 -
Lal14g0187 283 SUPERFAMILY TPR-like 8 119 IPR011990 GO:0005515
Lal14g0187 283 SMART Ubox_2 209 272 IPR003613 GO:0004842|GO:0016567
Lal14g0187 283 ProSiteProfiles TPR repeat profile. 83 116 IPR019734 GO:0005515
Lal14g0187 283 Pfam U-box domain 206 278 IPR003613 GO:0004842|GO:0016567
Lal14g0187 283 PANTHER OS08G0113300 PROTEIN 9 282 - -
Lal14g0187 283 SMART tpr_5 49 82 IPR019734 GO:0005515
Lal14g0187 283 SMART tpr_5 15 48 IPR019734 GO:0005515
Lal14g0187 283 SMART tpr_5 83 116 IPR019734 GO:0005515
Lal14g0187 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 282 IPR013083 -
Lal14g0187 283 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Lal14g0187 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 282 IPR045200 GO:0000209|GO:0061630
Lal14g0187 283 SUPERFAMILY RING/U-box 199 280 - -
Lal14g0187 283 Pfam Tetratricopeptide repeat 84 112 IPR019734 GO:0005515
Lal14g0187 283 Pfam Tetratricopeptide repeat 22 47 IPR019734 GO:0005515
Lal14g0187 283 ProSiteProfiles U-box domain profile. 205 279 IPR003613 GO:0004842|GO:0016567
Lal14g0187 283 Gene3D Tetratricopeptide repeat domain 8 172 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0187 Lal-Chr14 2074757 2080285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0187 11 282 U-box Gene Family AT3G07370 66.544 3.07e-136 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0187 K09561 - gmx:100796519 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0187 14 2074757 2080285 Lal19g0074 19 575683 581629 LSH