Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0128 ATGCCTCCAAGAACGGTTAAGAGAGGTGGTTCAGCGAGTGGTAGAAAGAGGGGTGGCAGAGGGACTCCAACACAGAAGGAGCAACAGCATCAGCAACATGAAGAATTTGTGAAGGTTGAAGAAGAAAAGCTGGTTATTGAAGAAGAACATAAGGTTCAAGATAACCCTATTGTAGTTGTTGAGGATAAGTCTATTGATATGAATCAAAAGGTTGCTGAATCTGATGAAGAACAAAATGCAGCCCACGTGCTTGATGAATTGCTTGTGGTGAAAAACGGTGAAGAGGAGGTTAAGGAGTCTATAGAGGAATATGAAAAAGATGAACAATTAGATTTGGAGGATAATGATCCTGAGTCCGAACCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATAGAACCAGATGAGGTTCATGAAGTAGAAGAGGATGTAGAAGTAGAGCCAGAAGAAATTGTTGGTGAAGAAGAGGTTGATACCGGTGAGGAAGAAGTTGAATATGTTCATGATGTACTCGAAGGTGAAGAGGATGATGAGCATGCTGGTGAGGAGCATGAGCATGCACAGATGGATGATGTGGAGGAAGAACACCGTGAAGTTGTAAAAGAGAGGCGAAAGCGGAAAGAATTCGAAGTGTTTGTTGGGGGGCTAGACAAGGATGCTACTGAAGATGATCTGAAGAAGGTTTTCGGTGTTGTTGGGGTGGTTACCGAAGTCAGGCTAATGATGAATCCTCAGACTAAAAAGAACAAGGGATTTGCATTCTTGCGCTTTGAAACTGTCGAACAAGCAAAGCGAGCTGTAGCAGAGCTAAAAAATCCAGTGATTAATGGCAAACGATGTGGTGTTACTCCTAGTCAGGACAGTGATACTCTCTATTTGGGTAACATATGCAAGACATGGACTAAGGAAGCTTTAAAGGAGAAGTTGAAACATTATGGAGTTACAAACGTTGAGGATGTGACATTAGTAGAAGATAGTAATGATAAAGGAATGAGCCGTGGATTTGCATTTTTGGAATTTTCCTCTCGCTCAGAAGCTATGGATGCCTTTAAGCGACTTCAGAAGAGAGATATTGTATTTGGAGTTGATAAGCCTGTGAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAAATTATGGCACAGGTTAAGACTTTGTTTATTGATGCTTTGCCTCCTTCGTGGGATGAAGATTATGTTCGGGATCTTCTTCAGAAATATGGGGAGATTGAAAAGATTGAGCTCGCCAGGAATATGCCAGCTGCTCGCAGAATGGACTATGGATTTGTTACATTTGGCACACATGAAGCTGCTGTAAGGTGTGCTGAAAGCATCAATGGTACGGAGTTGGGTGAAGGTGACAAGAAGGTCCGTCTTTCCATTTGGGCAAAAGTTAGGGCTAGATTGTCAAGACCACTTCAGAGAGGCCGTGGAAGACATGTTAGTCATGGGGACTACCGTTCAAGTCGCGGATCTGGATTAATGGCAAGGGCTTCATGGAGCCGACCTGCACCGCGTAGTTTCCCTCCTCCCCGTGGGATTAGAGGAAATGGAAGTCGTCTTCCGCCAGTCAGGCCTTTTAGTGTAAGAGATAGACGTCCTGTCATGTCCATACCAGTAAGAAGTAGGCCGGTGGATCCTCCAGCTAGATCCTATGATAGGAGACAGGCTGCTCCTGCATATCCAAGAAGTAGCATGAAGAGAGATTACAGTCGACATGAGGATATGCTACCTCCAAGAAGAGTTGCTGCAGATTATGGCTCAAGAGTGGTCTCCGAGAGACGCCCATCTTACAGGGATTACCCAGCCCGTGGCCCTAGCTACTCTGATCTCCCTAGAAGTACATCTCATGCTGCACCAAGGAGAGGTTATGTGGATGATGGCTATGGCCAAAGGTTTGAGAGGCTCCCACCTCCTCCTCCAAGTTACCGTGAAGGACGTCCTCGTGATTATGATACTCTGTCTGGTTCAAAGCGTTCTTATGCTGCCATAGATGATGTTCCTCCAAGATATGCTGATACTAGTGCCCGCCAATCAAGAGCTCGATTGAACTATGAATATGGTGATAATGCTTCACAGTATGGAGATGCTTATGGTGATAGACATGGAAGGTCTAGTCTGGGATATGGTGGTAGCAGCAGAAGTTCTATTTCTAGTCAAGATTCACATGGAATGTATAGCAGCCGTCACGGCTTGAGTTATGATGGAGGTTCTTTTGGTGGTAGTGATGTTGGCGGTGGCATGTACTCATCAAGTTATGGTGGTGATTATGTCTCTCGTGGAAGTGATGTTGGTGGCAGCTCGTATTCATCAACTTATTCTGGAAGGGGTGCGGGTAGTGGTAGCAGTTACATGGGTGGTGGTGGATCTGGATCTTATTATTGA 2397 0.4489 MPPRTVKRGGSASGRKRGGRGTPTQKEQQHQQHEEFVKVEEEKLVIEEEHKVQDNPIVVVEDKSIDMNQKVAESDEEQNAAHVLDELLVVKNGEEEVKESIEEYEKDEQLDLEDNDPESEPEEYGGVDYDEKEIEPDEVHEVEEDVEVEPEEIVGEEEVDTGEEEVEYVHDVLEGEEDDEHAGEEHEHAQMDDVEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLKKVFGVVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELKNPVINGKRCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDVTLVEDSNDKGMSRGFAFLEFSSRSEAMDAFKRLQKRDIVFGVDKPVKVSFADSFIDPGDEIMAQVKTLFIDALPPSWDEDYVRDLLQKYGEIEKIELARNMPAARRMDYGFVTFGTHEAAVRCAESINGTELGEGDKKVRLSIWAKVRARLSRPLQRGRGRHVSHGDYRSSRGSGLMARASWSRPAPRSFPPPRGIRGNGSRLPPVRPFSVRDRRPVMSIPVRSRPVDPPARSYDRRQAAPAYPRSSMKRDYSRHEDMLPPRRVAADYGSRVVSERRPSYRDYPARGPSYSDLPRSTSHAAPRRGYVDDGYGQRFERLPPPPPSYREGRPRDYDTLSGSKRSYAAIDDVPPRYADTSARQSRARLNYEYGDNASQYGDAYGDRHGRSSLGYGGSSRSSISSQDSHGMYSSRHGLSYDGGSFGGSDVGGGMYSSSYGGDYVSRGSDVGGSSYSSTYSGRGAGSGSSYMGGGGSGSYY 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0128 798 MobiDBLite consensus disorder prediction 477 662 - -
Lal14g0128 798 Gene3D - 292 374 IPR012677 -
Lal14g0128 798 CDD RRM_SF 293 371 - -
Lal14g0128 798 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 359 IPR000504 GO:0003723
Lal14g0128 798 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 390 455 IPR000504 GO:0003723
Lal14g0128 798 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 281 IPR000504 GO:0003723
Lal14g0128 798 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Lal14g0128 798 MobiDBLite consensus disorder prediction 764 798 - -
Lal14g0128 798 MobiDBLite consensus disorder prediction 176 195 - -
Lal14g0128 798 MobiDBLite consensus disorder prediction 20 35 - -
Lal14g0128 798 MobiDBLite consensus disorder prediction 106 164 - -
Lal14g0128 798 MobiDBLite consensus disorder prediction 694 733 - -
Lal14g0128 798 CDD RRM_SF 390 464 - -
Lal14g0128 798 PANTHER RNA RECOGNITION MOTIF 1 798 - -
Lal14g0128 798 SMART rrm1_1 212 285 IPR000504 GO:0003723
Lal14g0128 798 SMART rrm1_1 389 464 IPR000504 GO:0003723
Lal14g0128 798 SMART rrm1_1 292 371 IPR000504 GO:0003723
Lal14g0128 798 MobiDBLite consensus disorder prediction 1 35 - -
Lal14g0128 798 MobiDBLite consensus disorder prediction 712 731 - -
Lal14g0128 798 Gene3D - 177 291 IPR012677 -
Lal14g0128 798 Gene3D - 378 502 IPR012677 -
Lal14g0128 798 SUPERFAMILY RNA-binding domain, RBD 206 289 IPR035979 GO:0003676
Lal14g0128 798 SUPERFAMILY RNA-binding domain, RBD 290 461 IPR035979 GO:0003676
Lal14g0128 798 MobiDBLite consensus disorder prediction 767 798 - -
Lal14g0128 798 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 388 468 IPR000504 GO:0003723
Lal14g0128 798 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 798 - -
Lal14g0128 798 MobiDBLite consensus disorder prediction 570 584 - -
Lal14g0128 798 Coils Coil 90 110 - -
Lal14g0128 798 MobiDBLite consensus disorder prediction 92 164 - -
Lal14g0128 798 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 375 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0128 Lal-Chr14 1266125 1273155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0128 213 455 Eukaryotic Initiation Factors Gene Family AT2G36660 25.296 5.06e-15 77.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0128 14 1266125 1273155 Lal14g0128 14 1266125 1273155 ECH
Lal14g0128 14 1266125 1273155 Lal19g0032 19 246016 252055 LSH
Lal14g0128 14 1266125 1273155 Lal9g1490 9 17180006 17185824 PCT