Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0109 ATGTACGGAACATCGAACACTCAAGTTTCAGAGACAAATGTGAATGCCATTAACAATAACTTTGAACACAACTTGGTTTTTCAGGATATTCAAGCTCCGGCCACCGTGTTCTCCCCAAGTTCAAGCCTCCAGAATGTCTTTATGGCAGAGAGTTGGGGAGGGCCGCCGTTGAAGGAGGATGACGCCGATGACATGGTCATATATGGTGCTTTGCGTGATGCCGCGGCTACGGGATGGATCCCTAACCATAACAACATCAATGATGGAATGGTGAAAATGGAAAATGAGGGGGCAAATGGGGTCACCATTGCCGCCGCCGCATGTGGGAGTCGCGTGCCAAACTATCGAGGAGTACGCAGGCGGCCTTGGGGGAAGTATGCAGCCGAAATAAGAGACCCAAAGAAAAATGGTTCGAGAGTGTGGCTTGGTACTTATAAGACATCTGAGGATGCAGCTTTGGCTTATGATCGAGCAGCGTTTAAGATGCGCGGCTCAAAAGCCAAGCTAAATTTTCCTCACTTGATTGAATCTAATCAAGTTGAGCAAGGTAGGACCACACTGAAGCGGCAATCACCTGAAACACCCTTGTCGTGTCCTTATTCTTCGGATTACGACGGTGTTGAGAAGCGGAGCAAGGATAACGGGGGTGGTTCATTGGCCGCTTTTGAGCCGTATACCGTAAATATGTGGCAATTTTCGGTTGATAATTCATGGAGACAATACTAA 726 0.4793 MYGTSNTQVSETNVNAINNNFEHNLVFQDIQAPATVFSPSSSLQNVFMAESWGGPPLKEDDADDMVIYGALRDAAATGWIPNHNNINDGMVKMENEGANGVTIAAAACGSRVPNYRGVRRRPWGKYAAEIRDPKKNGSRVWLGTYKTSEDAALAYDRAAFKMRGSKAKLNFPHLIESNQVEQGRTTLKRQSPETPLSCPYSSDYDGVEKRSKDNGGGSLAAFEPYTVNMWQFSVDNSWRQY 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0109 241 MobiDBLite consensus disorder prediction 181 212 - -
Lal14g0109 241 PANTHER DNA-BINDING DOMAIN 39 212 IPR044808 GO:0003700|GO:0009873
Lal14g0109 241 CDD AP2 113 174 IPR001471 GO:0003700|GO:0006355
Lal14g0109 241 SUPERFAMILY DNA-binding domain 114 173 IPR016177 GO:0003677
Lal14g0109 241 Gene3D AP2/ERF domain 114 173 IPR036955 GO:0003700|GO:0006355
Lal14g0109 241 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
Lal14g0109 241 SMART rav1_2 114 178 IPR001471 GO:0003700|GO:0006355
Lal14g0109 241 MobiDBLite consensus disorder prediction 181 198 - -
Lal14g0109 241 Pfam AP2 domain 113 164 IPR001471 GO:0003700|GO:0006355
Lal14g0109 241 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Lal14g0109 241 PRINTS Ethylene responsive element binding protein signature 154 174 IPR001471 GO:0003700|GO:0006355
Lal14g0109 241 PANTHER BNAA04G25900D PROTEIN 39 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0109 Lal-Chr14 1110448 1111173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0109 42 232 AP2-EREBP Transcription Factor Family AT2G44840 48.744 3.02e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal14g0109 AP2 1.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0109 K09286 - gmx:100804762 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0109 14 1110448 1111173 Lal14g0109 14 1110448 1111173 ECH