Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1901 ATGGCCAAATCAATTTCTCTAACTTATCACCTTTCGAGACTCATATCTTCTTCTTCTTCTTCTTCGACAACAACAATAACAACACTCACATTACTCTCTCAATCTCAATTCCATTTTCCTTCTAGAATCTTCTCTTTCAGACCTCTCTCCACCACTACTACTCCATACCCTCTCCAATATGACTTAATTATTAATCACCCTCCTCCTCAAACACCTCGCCCACCACCTGTTCGATCAAATTCCTCTAACAACAATGCCTTCTCTGAACCCGATGAACCCGAGCTTAGACTAGACAGCTGGGTGGACCGAAAACTCGCCGAACCGGGTTCCCAACTTGAAAAGGGAAAGAGAAAGTATTACAACAAACGGAGGAAGAGGATGTACGGTGGTTCTGACTCTGATGAAGATGGTAACAGGAGAATGGATGATGAGATGATTGAGCTGAAACCTGAAGTTATAGAGTTTCCTACACTGCATAAGAGAGAAGAGGAATTGCATTTCTATGACGCATTTAGTTATCCATGGGAGAAGGAGAAGCATTACAAGATGGTGTATCAGTTGGAGAAGAAGTATTTTCCTGACCAGTGTCTCGATAAGGCATTTCTACAACCAGGGCAGAAGCAAGAGCGATCAAATGTAAATGATAATGAAAATAAGGCCAAGAAGAAAGAGGAGGATAAGAAGTTGGTGTTTTTTGAGGGAGAGAAAGAAAAGAGTGATAAAGATGTTAGTGAGAAGAAGGTGGAGGATTTTTTTAAGGGTTTGAAGAAGAAGAAGGTTAATAATGATTCAGTTGTTGCTGATGGGCATGTGAATGGAGTAGGGGAACCATTTTTTTCATCAAGGAGGACTGGTCTTCCTCCTATTTGGGATAGTCCACATGGCACTGTGCTGTTGATTAACAAACCCAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTGCGTCGCCTAGTCGAAGTGAAAAAGGTAGGCCATGCTGGAACTCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGCAAAGCAACAAAACTGGTAGACAGATATCAAGGGATGGTTAAGGGTTATAGCGGGGTTTTTCGCTTAGGGGAGGCTACCTCAACATGGGATGCCGATTCATCAGTCATTCAACGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAATGCTTCATCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCAATGTTCTCTGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTCTCACCAAGACGGATTTCAATTTTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTCGGGTGACATGTTCTAAAGGGACATATATTCGGTCACTCTGTGCAGATTTTGGGAAGACTCTTGGAAGCTGCTCCCATCTTACTGCTCTTAGAAGAGATTCAATTGGGCAATATTTAGCTGATGATGCATGGGAATTTCAAGAGCTGGAAGAAGCTATTACCAAAAGTTATGTCTAA 1545 0.4181 MAKSISLTYHLSRLISSSSSSSTTTITTLTLLSQSQFHFPSRIFSFRPLSTTTTPYPLQYDLIINHPPPQTPRPPPVRSNSSNNNAFSEPDEPELRLDSWVDRKLAEPGSQLEKGKRKYYNKRRKRMYGGSDSDEDGNRRMDDEMIELKPEVIEFPTLHKREEELHFYDAFSYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLQPGQKQERSNVNDNENKAKKKEEDKKLVFFEGEKEKSDKDVSEKKVEDFFKGLKKKKVNNDSVVADGHVNGVGEPFFSSRRTGLPPIWDSPHGTVLLINKPKGWTSFTVCGKLRRLVEVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMVKGYSGVFRLGEATSTWDADSSVIQREPWEHIKDEDIKKNASSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKTLGSCSHLTALRRDSIGQYLADDAWEFQELEEAITKSYV 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1901 514 MobiDBLite consensus disorder prediction 62 94 - -
Lal13g1901 514 Coils Coil 206 226 - -
Lal13g1901 514 Pfam tRNA pseudouridylate synthase B C-terminal domain 467 510 IPR032819 -
Lal13g1901 514 MobiDBLite consensus disorder prediction 111 140 - -
Lal13g1901 514 CDD PseudoU_synth_EcTruB 297 508 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lal13g1901 514 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 273 512 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lal13g1901 514 Hamap tRNA pseudouridine synthase B [truB]. 294 514 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lal13g1901 514 Gene3D Pseudouridine synthase 291 513 - -
Lal13g1901 514 SUPERFAMILY Pseudouridine synthase 296 509 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lal13g1901 514 TIGRFAM TruB: tRNA pseudouridine(55) synthase 296 505 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lal13g1901 514 MobiDBLite consensus disorder prediction 125 140 - -
Lal13g1901 514 Pfam TruB family pseudouridylate synthase (N terminal domain) 316 466 IPR002501 GO:0006396
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1901 297 488 NAC Transcription Factor Family AT3G57150 33.854 6.71e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1901 K03177 - gmx:100793939 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1901 13 18484272 18490064 Lal13g1901 13 18484272 18490064 ECH