Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1900 ATGGAGGAGGAGGTTAAGGAAAAGCTGTGGAATGGTGATAGAGAAGCTCAAATTCAAGGAGCTATAGAAGTTAGTAGATTAAGTAGTAAGCGAAGGCACAAATTGGTAGAAAGTGGAGTTGTAGAACCTCTTATTTCCATGCTTCATTCTCAAAGTTATGAAGCCATTGAAGCTTCTCTCTCTGCTCTACTCAGCCTTGCCTATGGCAGTGAAAGGCATAAGATTCGGATCATGAAGTCTGGAGTTTTACCAGTTTTGTTTAATCTCTTTCATTGCCAATGCCAAACAGTTATACAATTGGCAATAGCAGCCATGCTAACACTATCTTCTTGTAAGGAAAACAAGGTAGCAATTGCTTCATCTGGTGCAGTCCAACTCTTAGTTGAATTTGTCAATTGCAATAATAACATTGAGTTCAAACTTGATGCTATAGCTACTCTCCACAGCCTCACAACATGTAAAGAGATTATTCCATTGATTATCTCTTCTGGTGTTACACTTTGCTTGTTTGAACTAATCCACAACTCATTCAAATCATCAACACTGGTTGAAAAAGCAACAGGGTTGCTAGAAAGTATTGTATCTTCTTCAAGGAGTGCACTTTGTAAGGCTGCTAGTATTGGTGGAGCAATCAAGATACTTGTTGAGACTATTGAAGATGGTTCTTTATTAGGAAAAGAGCATGCAGTGGTGATACTTTTACTTATATGCAGAAGTTGTAGAGAAAAGTATAGAGGGTTGATTTTGAGAGAAGGAGTGATGCCAGGGTTGCTTCAGTTAAGTGTGGATGGCACATGGAGATCCAAAAACATGGCTAAAGAACTGTTGTTGCTTCTGAGGGATTCTTCTGATTGTAGGTCAACACATAATAAACAAATGAATCATGAGCTTATAGGGAGGATCATGGAAGAAATTGATGCAGAAGGAGAGAAGTTTGCTGATTCTAAGTTGAGGTTGGTGGAGGAAATGATTGCAAAGCTCAATATAATCTATTTCAATTAA 1002 0.3822 MEEEVKEKLWNGDREAQIQGAIEVSRLSSKRRHKLVESGVVEPLISMLHSQSYEAIEASLSALLSLAYGSERHKIRIMKSGVLPVLFNLFHCQCQTVIQLAIAAMLTLSSCKENKVAIASSGAVQLLVEFVNCNNNIEFKLDAIATLHSLTTCKEIIPLIISSGVTLCLFELIHNSFKSSTLVEKATGLLESIVSSSRSALCKAASIGGAIKILVETIEDGSLLGKEHAVVILLLICRSCREKYRGLILREGVMPGLLQLSVDGTWRSKNMAKELLLLLRDSSDCRSTHNKQMNHELIGRIMEEIDAEGEKFADSKLRLVEEMIAKLNIIYFN 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1900 333 Gene3D - 3 277 IPR011989 -
Lal13g1900 333 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 39 81 IPR000225 GO:0005515
Lal13g1900 333 SMART arm_5 70 110 IPR000225 GO:0005515
Lal13g1900 333 SMART arm_5 153 195 IPR000225 GO:0005515
Lal13g1900 333 SMART arm_5 28 68 IPR000225 GO:0005515
Lal13g1900 333 SMART arm_5 111 152 IPR000225 GO:0005515
Lal13g1900 333 Pfam Armadillo/beta-catenin-like repeat 31 67 IPR000225 GO:0005515
Lal13g1900 333 SUPERFAMILY ARM repeat 4 302 IPR016024 -
Lal13g1900 333 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 309 - -
Lal13g1900 333 PANTHER U BOX DOMAIN-CONTAINING 1 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1900 Lal-Chr13 18474295 18478034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1900 7 286 U-box Gene Family AT3G54790 30.420 1.50e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1900 - - lang:109336206 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1900 13 18474295 18478034 Lal13g1900 13 18474295 18478034 ECH