Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1898 ATGGATGAACACGTTGTTGGTGGCGCTGAACAAAACGACGCCGTTATACCCTTTTCTCACAGAGAAGAGGATGATGAAGAAATTCAACAACACCAACACCACAATTCTCATCCTCTTACCGGTGATGGTGCCAGTCCTGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCCCAATTTATCAAGCACTTTGGTAAATATGGCGAGATCACTGACTCTGTCATCATGAAGGACCGCAAAACTGGCCAGCCTCGTGGGTTTGGGTTCATAACATATGCAGATCCCTCTGTGGTTGATAAAGTCATTGAGGACACTCATGTAATCAATGGCAAACAAGTTGAGATTAAGCGCACAATACCAAGGGGAGCTGGTGGTTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGGATTCCTTCAACTGTGACTGAAGATGAATTTAGAGACTTTTTTACCCGATATGGAGAAGTCAGAGATCACCAAATAATGCGGGACCACTCCACTAATCGTTCTCGTGGCTTTGGGTTTATCACCTTTGATGCTGAGGAAGCCGTTGACGATCTTCTGTCTTTGGGGAACAAGATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGTCAAACCCACCGCCTCCATCATCCAAGCGTTACAATGACTCAAGGTCTTCATACAGCGGTGGTGGGTATGGAGGAGATGCTTATGAAGGATTTGGTGGCGGCTTTGGTGTTGGAGGTTACAGATCTGGTGCTGGTGTCTATGGTGGTAGGGGCGCTGCATATGGTGGCTACGGGAGTGAATTTGGAGGCTATGGTGGCTATGCTGGTGCGATGGGCCCCTATAGAGATCCTTCCCTTGGATACGCCGGTCGTTATGGCGGAGGCTTTAGCAGAGGCTATGGAAGTGAGTTTGGTGGGTATGGTGGACCAAGTGAGAGTTATGGTGCATATGGTGGTGCTGCTAGTGGTGGTGCTTCTTCTGGTGCCGGTGCCTATCAAAGTGGTTATGATGCCGGATTAGGTGGTGGATATGGAGGAGGGGCTAGTGGAGGCTCCTTTTATGGGAGTAGAGGAGGTTATGGTGCTGGTCGATACCATCCTTATGGAAGATAG 1137 0.4776 MDEHVVGGAEQNDAVIPFSHREEDDEEIQQHQHHNSHPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPRGAGGSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVRDHQIMRDHSTNRSRGFGFITFDAEEAVDDLLSLGNKIEFAGAQVEIKKAEPKKSNPPPPSSKRYNDSRSSYSGGGYGGDAYEGFGGGFGVGGYRSGAGVYGGRGAAYGGYGSEFGGYGGYAGAMGPYRDPSLGYAGRYGGGFSRGYGSEFGGYGGPSESYGAYGGAASGGASSGAGAYQSGYDAGLGGGYGGGASGGSFYGSRGGYGAGRYHPYGR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1898 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 123 IPR000504 GO:0003723
Lal13g1898 378 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 22 378 - -
Lal13g1898 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Lal13g1898 378 MobiDBLite consensus disorder prediction 1 45 - -
Lal13g1898 378 Gene3D - 17 132 IPR012677 -
Lal13g1898 378 MobiDBLite consensus disorder prediction 210 233 - -
Lal13g1898 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 116 IPR000504 GO:0003723
Lal13g1898 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 204 IPR000504 GO:0003723
Lal13g1898 378 MobiDBLite consensus disorder prediction 16 33 - -
Lal13g1898 378 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 22 378 - -
Lal13g1898 378 Gene3D - 135 218 IPR012677 -
Lal13g1898 378 SUPERFAMILY RNA-binding domain, RBD 34 126 IPR035979 GO:0003676
Lal13g1898 378 SUPERFAMILY RNA-binding domain, RBD 133 241 IPR035979 GO:0003676
Lal13g1898 378 SMART rrm1_1 48 119 IPR000504 GO:0003723
Lal13g1898 378 SMART rrm1_1 136 209 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1898 Lal-Chr13 18466458 18470345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1898 47 247 Eukaryotic Initiation Factors Gene Family AT2G23350 24.757 1.88e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1898 K12741 - gmx:100793209 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1898 13 18466458 18470345 Lal13g1898 13 18466458 18470345 ECH