Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1893 ATGAAAGAGGATGAAATAGCATCGCTAGATTTGGAAGAGGTGAAAGTTATAGCCCCGGTGGGTCACGGTGCGAAGGGGGTGGTGTTCCTCATTGAAACCGGTGAGCAGTCATGTCTGGCTCTGAAAGTAATATCCAAAGCCCTTCTAGAGAAAAAGAAGAAAGAAGGTTGTGGAGAATATAAGAGGTTGTCGTTTGAACAACAAGTGCTACGTCGTTTTGATCACCCTCTATTGCCTCGTCTTAGAGGTGTTATTGAAACTCAAAATATCGTTGGCTTCGCTATTGATTATTGCCATGGTGGTACTTTTCATTCTCTTAGGTCAAAACAGTCTGAGAAAATCTTCTCACATGATACTATCAGGTTCTACGCGGTGGAATTGTTACTAACATTAGAATATTTGCACAATCTGGGAATAGTATACAGAGATTTGAAGCCAGAAAACATAATGATCCAACAAAACGGTCACATAATGCTCGTTGATTTCGATCTCTCTACAAAGCTCAACACAAAAACAACTAGTCATGAATCATTATCCCGCACTAATTTTAACTCCTCGAAGTTGAAGAGAAAACGATTTAAGTGGTTGTTGTCATCACGTTTTAAATCTGGAATTTCACCATGTAATGGTGATTCAGAGTTAGAAAAGGAAGTTACTATTTGCAATAACACAATCATTGAACAAATTCAGAAATCAAATTCATTTGTTGGAACTGAAGAATATGTAGCACCAGAAGTTGTAGGAGGAAAGGGTCATGATTTTAGTGTTGATTGGTGGTCATACGGCGTCGTTTTATATGAGATGTTATATGGAATCACACCGTTTAGGGGTTTAAATAGGAATGAAACGTTTCACAATATCTTAACAAAGGAGGCGGAACTAACTGGAATGAAGACGGCGTTAAGGGATTTAATTAGGAGGTTATTGGAAAAAGATCCTGGCCGTAGGATTAAGGTTCATGAGATTAAAGGTCATGAGTTCTTTAAAGGTGTTAAGTGGGATATGGTGTTGGAAATAGCAAGACCACCTTATATTCCTCATAATAATAATAATAATAATAATAATAATAATAATGAGGTTACGGACATTGTTGGGTTTAGCCAAAAAGATGTGGAGCTCTTTGTGCATGAAATATTTTTTCCAAAGAGTGGTGATGATGATCATAAAAAATAA 1173 0.3708 MKEDEIASLDLEEVKVIAPVGHGAKGVVFLIETGEQSCLALKVISKALLEKKKKEGCGEYKRLSFEQQVLRRFDHPLLPRLRGVIETQNIVGFAIDYCHGGTFHSLRSKQSEKIFSHDTIRFYAVELLLTLEYLHNLGIVYRDLKPENIMIQQNGHIMLVDFDLSTKLNTKTTSHESLSRTNFNSSKLKRKRFKWLLSSRFKSGISPCNGDSELEKEVTICNNTIIEQIQKSNSFVGTEEYVAPEVVGGKGHDFSVDWWSYGVVLYEMLYGITPFRGLNRNETFHNILTKEAELTGMKTALRDLIRRLLEKDPGRRIKVHEIKGHEFFKGVKWDMVLEIARPPYIPHNNNNNNNNNNNEVTDIVGFSQKDVELFVHEIFFPKSGDDDHKK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1893 390 SMART serkin_6 14 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1893 390 Gene3D Transferase(Phosphotransferase) domain 1 102 175 - -
Lal13g1893 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Lal13g1893 390 PANTHER FLIPPASE KINASE 1-RELATED 7 385 - -
Lal13g1893 390 SUPERFAMILY Protein kinase-like (PK-like) 11 350 IPR011009 -
Lal13g1893 390 ProSiteProfiles Protein kinase domain profile. 14 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1893 390 Gene3D Transferase(Phosphotransferase) domain 1 221 357 - -
Lal13g1893 390 PANTHER SERINE/THREONINE-KINASE OXI1-LIKE PROTEIN 7 385 - -
Lal13g1893 390 Gene3D Phosphorylase Kinase; domain 1 15 101 - -
Lal13g1893 390 Pfam Protein kinase domain 227 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1893 390 Pfam Protein kinase domain 16 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1893 Lal-Chr13 18439719 18441264 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1893 3 379 AGC Kinase Gene Family AT3G25250 54.474 5.80e-139 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lal13g1893 Pkinase 6.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1893 K20714 - gmx:100802487 462.996