Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1890 ATGTCTCTCTTCCTCTTACCTTCCTCTCTTTCTCTCTCTCTCTCTCCATATACATTCAAAATAATGGACAAAAGACCATGCAACTCATCACAGGATCCTGAAGTAAGAAAGGGGCCATGGACCATGGAAGAAGACTTGATCTTGATCAACTACATAGCAAATCATGGTGAAGGTGTATGGAACTCCTTAGCTAAATCTGCTGGTCTTAAACGCACCGGAAAGAGCTGCCGACTCCGGTGGCTGAACTACCTCCACCCTGATGTTAGAAGAGGAAATATTACACCAGAGGAACAACTTTTGATCATGGAACTTCATGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCAAAGCATCTCCCAGGAAGAACTGACAATGAGATTAAGAACTTTTGGAGGACTAGGATTCAGAAACATATTAAGCAAGCTGAGAATTTCCAGCAACAGTGTAATTCTGATAAGACAAATGATCATAACCATAATCATCATCATCAAGGAAGCACTAGTCAAATGTCTACCAACATGACTCACCACGAGCCAATGGGAACAATATATTCTTCATCTTCATATCAAGGAGAAACTATGGATCCAATATTTCCAACTCAGTTCACTCCATTAATCCCTGATCCACCTAGTTGTTGTCCTACCAATGACAACACCTATTGGAGCATGGAGGATATCTGGTCAATATGA 690 0.413 MSLFLLPSSLSLSLSPYTFKIMDKRPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLHPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQAENFQQQCNSDKTNDHNHNHHHQGSTSQMSTNMTHHEPMGTIYSSSSYQGETMDPIFPTQFTPLIPDPPSCCPTNDNTYWSMEDIWSI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1890 229 SMART sant 89 137 IPR001005 -
Lal13g1890 229 SMART sant 36 86 IPR001005 -
Lal13g1890 229 CDD SANT 94 133 IPR001005 -
Lal13g1890 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Lal13g1890 229 SUPERFAMILY Homeodomain-like 34 131 IPR009057 -
Lal13g1890 229 CDD SANT 39 84 IPR001005 -
Lal13g1890 229 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 22 229 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lal13g1890 229 MobiDBLite consensus disorder prediction 164 188 - -
Lal13g1890 229 Gene3D - 37 89 - -
Lal13g1890 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Lal13g1890 229 MobiDBLite consensus disorder prediction 150 188 - -
Lal13g1890 229 Gene3D - 94 167 - -
Lal13g1890 229 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
Lal13g1890 229 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Lal13g1890 229 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Lal13g1890 229 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Lal13g1890 229 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 22 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1890 Lal-Chr13 18399940 18403593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1890 31 229 MYB Transcription Factor Family AT3G01530 55.224 2.74e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal13g1890 Myb_DNA-binding 7.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1890 K09422 - gmx:778046 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1890 13 18399940 18403593 Lal13g1890 13 18399940 18403593 ECH
Lal12g1493 12 18149259 18149629 Lal13g1890 13 18399940 18403593 LSH
Lal13g1890 13 18399940 18403593 Lal24g1445 24 15730599 15734433 LSH