Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1889 ATGGAACATGTTTTGGAAAAAAGATTTCCTCTCAATGCCAAAGATTATGAGTTATATGAAGAAGTCGGTGAAGGAGTTAGCGCCACGGTATACAGGGCCCTCTGTATTCCTCTCAATGAGATAGTTGCCATCAAGGTTCTTGATCTCGAGAAGTGCAATAACGATCTGGATGGCATTAGGAGAGAGGTGCAGACCATGAGCTTGATTGGTCATCCAAATCTTTTACGGGCACATTGCTCTTTTACTGCTGGACATAACCTTTGGGTTGTGATGCCATACATGGCTGGGGGGTCTTGCCTTCACATAATCAAATCTTCTTATCCTGAGGGTTTTGACGAACCTGTTATTGCTACTTTATTGCATGAGGTTCTCAAAGCTCTTGTCTATCTTCATGCCCATGGTCACATACATAGAGATATTAAGGCTGGGAATATTTTACTTAATTCTAATGGTTCAGTCAAAGTAGCTGACTTTGGGGTGTCAGCATGTATGTTTGATACTGGAGATAGACAGCGTTCAAGAAATACTTTTGTTGGAACACCTTGCTGGATGGCTCCTGAAGTTATGCAGCAATTGCATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACTGCACTTGAACTTGCTCATGGTCATGCACCATTTTCTAAGTACCCACCGATGAAAGTTTTACTTATGACTTTGCAAAATGCCCCTCCTGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGTCTTTCAAAGAGTTGGTTGCCACCTGCTTAGTGAAAGATCCAAAGAAACGTCCAAGCTCAGAAAAGCTTTTAAAGCACCACTTCTTTAAACATGCCCGTCCCACCGATTATCTTGCTCGCACCATTCTAGATGGTCTTGCTCCATTAGGAGATCGTTTTAGAATGCTGAAGGCCAAAGAGGCAGATTTATTGGTGCAGAATACGGCCCTTTATGAGGATAAGGAACAATTATCTCAGAAAGAGTATATTCGAGGAATTAGTGCCTGGAATTTCAACCTGGAGGATTTAAAAAGTCAAGCTGCTCTTATCCGAGATGATGACATCCCAAATGCAGAAGAGCTACAAATGGATAAGCAGCAGAACAACCGATCTGATGAGTTCGAGGTTCCAGCAGAAGGGCTATCTGCTGTAGAACCTAATCATTCAGATGCTGCAGTCACATTGGATAAGGAGGATGGATTCAACAATCTTCAGGATTTGGGGAGTTCACTTGCTTCATTTCCTATTAAACCTCTTCAAGCACTTAAAGGTTGTTTTGATACATGTGAGAATGATGTCAACAATACTAGTCCAAGAGATGCCAATGAAAGTACTGGACCAAGTAATTTGTTGCCACAAAATGCCATAAATCAGAATAAAAAGTTTTTGAGTGGTTCTTTGTTGCCTGATAATTTTCTTTCTCCGAAAAAGGTTGCTACTGATGGGGACAGGGATTACCTACAAACAAAATATTCTTCTGAGCGGAATCATAGTGGTCCATTGTTACTTCGGCAGAAGAGAGACACCAACAACCTTCCATTGGTTGATGACACATCAGAAGGAGCAATTGTCCAGCGCAAGGGGCGGTTTAAGGTCACATCCGCAGATCCAATGGGTCCTTCAAACTGCAATTTTGGCCCAGCTGTTGGAGGTCCTAGCAGTCCACCAAATCCGAAATCCATGACAGCCTCTGTTCTTCCACCACTGCAATGCATCTTGCAACATAACAGTTTACAGAGGGAAGAAATTATTAAATTAATAAAGTATGCTGAGCAATGTTGTGCCAAGAATACAGAATTGACAGAGGCAGGGGCAGTTGATCTTTCACAGGTACCACCTGTGGCAACTAGGGAGAGAGAGCTGAATTTTCAGGTGATTCAACTCCAACAGAGCATTGGGAGCCTTGTTGAGGAATTGCAAAGACAAAGAATGAAAAATGTTCAGTTAGAGAAAGAATTGAGCTCAATGGCCAACAAAATTGAAAATGAAGAACAAGATAATAAGCAGTTTAATGGTTTGATTGATATTGGACAAAGCTTGAAGTTAAATGGTAACATGGTATGA 2067 0.4112 MEHVLEKRFPLNAKDYELYEEVGEGVSATVYRALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIGHPNLLRAHCSFTAGHNLWVVMPYMAGGSCLHIIKSSYPEGFDEPVIATLLHEVLKALVYLHAHGHIHRDIKAGNILLNSNGSVKVADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKELVATCLVKDPKKRPSSEKLLKHHFFKHARPTDYLARTILDGLAPLGDRFRMLKAKEADLLVQNTALYEDKEQLSQKEYIRGISAWNFNLEDLKSQAALIRDDDIPNAEELQMDKQQNNRSDEFEVPAEGLSAVEPNHSDAAVTLDKEDGFNNLQDLGSSLASFPIKPLQALKGCFDTCENDVNNTSPRDANESTGPSNLLPQNAINQNKKFLSGSLLPDNFLSPKKVATDGDRDYLQTKYSSERNHSGPLLLRQKRDTNNLPLVDDTSEGAIVQRKGRFKVTSADPMGPSNCNFGPAVGGPSSPPNPKSMTASVLPPLQCILQHNSLQREEIIKLIKYAEQCCAKNTELTEAGAVDLSQVPPVATRERELNFQVIQLQQSIGSLVEELQRQRMKNVQLEKELSSMANKIENEEQDNKQFNGLIDIGQSLKLNGNMV 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1889 688 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Lal13g1889 688 SUPERFAMILY Protein kinase-like (PK-like) 13 313 IPR011009 -
Lal13g1889 688 MobiDBLite consensus disorder prediction 533 562 - -
Lal13g1889 688 CDD STKc_OSR1_SPAK 14 277 - -
Lal13g1889 688 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1889 688 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1889 688 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal13g1889 688 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Lal13g1889 688 Gene3D Transferase(Phosphotransferase) domain 1 97 296 - -
Lal13g1889 688 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 663 - -
Lal13g1889 688 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 663 - -
Lal13g1889 688 Coils Coil 633 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1889 Lal-Chr13 18384604 18394497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1889 1 660 MAP Kinase Kinase Kinase Kinase AT5G14720 65.843 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Lal13g1889 Pkinase 1.4e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1889 K08835 - gmx:100784402 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1889 13 18384604 18394497 Lal13g1889 13 18384604 18394497 ECH
Lal12g1500 12 18211132 18221238 Lal13g1889 13 18384604 18394497 LSH