Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1883 ATGTCTAACCCAATGCCTAACGCCAATAACCCAAAGAAGAGCAAGGGTCGTCAAAGGATTGAGATGAAGAAGATAACCAAAGAGAGCAACCTGCAAGTCACATTCACCAAACGTCGCAATGGGCTTTTCAAGAAGGCCAACGAGCTTTGCACTCTTTGTGATGCACAAGTTGCTCTTCTTGTCTTCTCTCCTTCAAACAAGCTTTTCTCCTTTGGTAAACCTAGTGTTGATGCTGTCATTGACCGCTATCTACTGAAGGACCAACCTCAAAACTTGGAGAACATGCAGTATCTTCAGGAACTTACTGATAAGATTAATGAGATCAATGAAGATCTTGAGACTGAGAAGAAGTGCAGTGAAGATATTGCTAAGGAAAGGAAAGAGGCACAAGAACAATTCTGGTGGGCTTCTCCAATTGAAGATATGAAGGGAAACCAACTTGGTCAGTTCAAGTTGGCTCTTGAGAATCTGAAGAAGGACGTGAAAGGTGTTGTTGAAAGGAAGAATATTGGTCAGGGTGGTTCTGCTGCTATCCCACCTCCTAACCTTTTTAAAGCTGCTCCATCTTCTTCAAATATCCCTTTGCAGACACCATCTCAGCTGTTTCCACAAGCACCATCACATATGCTTCAGAACCAGCCCATGATTCTGACTAATAATATGTTCAATGGAGCTATGATGAATCACCCTACCTTCAATAATAATAATATGGGTGGATATGGACCTGCAGGTGGATTCTTTTGA 744 0.422 MSNPMPNANNPKKSKGRQRIEMKKITKESNLQVTFTKRRNGLFKKANELCTLCDAQVALLVFSPSNKLFSFGKPSVDAVIDRYLLKDQPQNLENMQYLQELTDKINEINEDLETEKKCSEDIAKERKEAQEQFWWASPIEDMKGNQLGQFKLALENLKKDVKGVVERKNIGQGGSAAIPPPNLFKAAPSSSNIPLQTPSQLFPQAPSHMLQNQPMILTNNMFNGAMMNHPTFNNNNMGGYGPAGGFF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1883 247 Gene3D - 28 97 IPR036879 GO:0003677|GO:0046983
Lal13g1883 247 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Lal13g1883 247 CDD MADS_MEF2_like 16 84 IPR033896 GO:0000977|GO:0045944
Lal13g1883 247 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Lal13g1883 247 MobiDBLite consensus disorder prediction 1 20 - -
Lal13g1883 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 71 IPR002100 GO:0003677|GO:0046983
Lal13g1883 247 Coils Coil 98 118 - -
Lal13g1883 247 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Lal13g1883 247 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Lal13g1883 247 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Lal13g1883 247 PANTHER MADS BOX PROTEIN 15 164 - -
Lal13g1883 247 SUPERFAMILY SRF-like 16 95 IPR036879 GO:0003677|GO:0046983
Lal13g1883 247 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 15 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1883 Lal-Chr13 18359897 18360640 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1883 12 161 Type I MADS-box Gene Family AT5G60440 50.932 1.80e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal13g1883 SRF-TF 4.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1883 - - lang:109341361 296.589