Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1881 ATGTCTAATCCAATCCCTAACCCTGTCCCAAAGAAGAACAAGGGTCGTCAAAAGATTGAGATGAAAAAGATAACCAAAGAGAGCAACCTGCAAGTGACATTCTCCAAACGCCGCACTGGGCTATTCAAAAAAGCCAGTGAGCTTTGCACTCTTTGTGATGCAAAGGTTGGCTTAGTTGTCTTCTCTCCTGCTAACAAGGCTTTCTCCTTTGGTGACCCAAGTATTGATGCTGTCATAGACCGCTATCAAATGAGGGAGCAACCACCACTTAACATGGGGAACATGCAATATCTAGAGGCTCACCGAAGTGCTCATGTTCAGGATCTTAATAATAAGATTAATCGGATGAATGAAGAGCTTGAGATTGAGAAGAAGTGCAGTGAAGAGCTGGCTAAGCAAAGGAAGGAGGCACAAGAACATTTCTGGTGGGCTGCTCCAATTGATGAGATGCATGGAGAGCAACTTGATCAATTCAAGTTCGCTCTTGAGAATCTGAAGAAGAATGTGCTTGCTGTTGTTGAAAGGCAGAAAATTGCTGAGGCTGCTGAGGCTGCTATTCCACCTCCTAACTTTTTTATAGGTGGCCCATCTTCTTCTAACAACCCTTTGCAGCCACCACCTCTGCCACCAACTCAGGAGTTTCCGCTGCAGCTACCACCACCTCAGCAGTTTATGCAACCACTGCCTCAGCAGTTTCCTGTGTATCCTCCTCCACCACCACCACCACCACCATCACATATGCTTCAGAACCAGACCTTGATGCTGCCAAATAATATGTTTAATGGTACAATGATGAATCAACTATCCTTCAATAATAATATGGGTGGATATGGACCTGCAGGTGGATTCTTTTGA 855 0.4491 MSNPIPNPVPKKNKGRQKIEMKKITKESNLQVTFSKRRTGLFKKASELCTLCDAKVGLVVFSPANKAFSFGDPSIDAVIDRYQMREQPPLNMGNMQYLEAHRSAHVQDLNNKINRMNEELEIEKKCSEELAKQRKEAQEHFWWAAPIDEMHGEQLDQFKFALENLKKNVLAVVERQKIAEAAEAAIPPPNFFIGGPSSSNNPLQPPPLPPTQEFPLQLPPPQQFMQPLPQQFPVYPPPPPPPPPSHMLQNQTLMLPNNMFNGTMMNQLSFNNNMGGYGPAGGFF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1881 284 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 70 IPR002100 GO:0003677|GO:0046983
Lal13g1881 284 PANTHER MADS BOX PROTEIN 13 174 - -
Lal13g1881 284 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 13 174 - -
Lal13g1881 284 Coils Coil 106 137 - -
Lal13g1881 284 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Lal13g1881 284 CDD MADS_MEF2_like 15 83 IPR033896 GO:0000977|GO:0045944
Lal13g1881 284 Gene3D - 94 186 - -
Lal13g1881 284 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Lal13g1881 284 Gene3D - 27 93 IPR036879 GO:0003677|GO:0046983
Lal13g1881 284 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Lal13g1881 284 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Lal13g1881 284 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Lal13g1881 284 SUPERFAMILY SRF-like 15 100 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1881 Lal-Chr13 18347945 18348799 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1881 11 201 Type I MADS-box Gene Family AT5G60440 52.850 2.04e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal13g1881 SRF-TF 5.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1881 - - lang:109339900 328.561