Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1879 ATGTCTAACCCAAGGAGGAGCAAGGGTCGTCAAAAGATTGAAATGAAAAAGATGACCAAAGAGAGCAACCTACAAGTCACATTCTCCAAACGCCGCAGTGGTCTTTTCAAAAAAGCCAGTGAGCTTTGCACTCTTTGTGGTGCACAAGTTGCTCTTGTTGTCTTTTCTCCTGCAAACAAGGTTTTCTCCTTCGGTGACCCTTGTGTTGATGCTGTCTTAGAACGCTATCAAATGCGAACCCTACAAAAAAACTTGGGGAGCATGCATTTTCTAGAGGCTCACCGAAATGCTAATGTTCAAGAGCTTAATGCTCAGATGAATCGGATCTGTGAAGATTTGGATATTGAGAAAAAATGCAATGAAGCACTGGCTAAGAAACGAAAAGAGGCACAAGAACAGTTCTGGTGGGCTTCTCCAATTGAAGAGATAAATGGAGACCAACTTGAACAATTGAAGTTGGCTCTTGAGAATCTGAAGAAGAATGTCATTGATGTTGTTGAAAGACAGAATGTTATTATTCATGGTGGTTCTTCTATTCCACCTTCTCACTTTTTTACAGGTGGTTCATCTTCTTCAAACAACCCTCTTCCGCGATATCAACCACCACCTCAGCAGTTTCCGGTGTATCCAAATCCGCCACAACCGCCACAGATGCTTCAGAACCAACACATGATGCTGCCAAATCATATGTTTAATGGTGCCATGATGCATCACCCTTCCTTCAATAACAATAACATGGGAGGATTTGGACCTGCTACTGGATTCTTTTGA 771 0.4228 MSNPRRSKGRQKIEMKKMTKESNLQVTFSKRRSGLFKKASELCTLCGAQVALVVFSPANKVFSFGDPCVDAVLERYQMRTLQKNLGSMHFLEAHRNANVQELNAQMNRICEDLDIEKKCNEALAKKRKEAQEQFWWASPIEEINGDQLEQLKLALENLKKNVIDVVERQNVIIHGGSSIPPSHFFTGGSSSSNNPLPRYQPPPQQFPVYPNPPQPPQMLQNQHMMLPNHMFNGAMMHHPSFNNNNMGGFGPATGFF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1879 256 Gene3D - 88 170 - -
Lal13g1879 256 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Lal13g1879 256 Gene3D - 21 87 IPR036879 GO:0003677|GO:0046983
Lal13g1879 256 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Lal13g1879 256 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Lal13g1879 256 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Lal13g1879 256 PANTHER MADS BOX PROTEIN 7 198 - -
Lal13g1879 256 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Lal13g1879 256 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
Lal13g1879 256 MobiDBLite consensus disorder prediction 182 203 - -
Lal13g1879 256 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Lal13g1879 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Lal13g1879 256 Coils Coil 148 168 - -
Lal13g1879 256 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 198 - -
Lal13g1879 256 Coils Coil 113 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1879 Lal-Chr13 18328917 18329687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1879 5 194 Type I MADS-box Gene Family AT5G60440 51.282 9.14e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal13g1879 SRF-TF 2.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1879 - - lang:109339900 282.337