Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1878 ATGCCTAACTCTAATCCAAGAAGGAGCAAGGGTCGTCAAAAGATTGAGATGAAAAAGATAACCAACGAAAGCAACCTACAAGTCACATTCTCCAAACGTCGCAGTGGGCTTTTCAATAAAGCCAGTGAACTTTCAACTCTTTGTGATGCACAAGTTGCGCTTGTTGTTTTCTCTCCTGGGAACAAGGTTTTCTCCTTTGGTGACCCTAGTGTTGATGCTGTCATTAACCGCTATCAAATGAGGGACCAACCACAAAACTTGAGGGACATGTATTTTCTAGAGAATCACCGCAATACCAATGTTCAGGAGCTTAATGATAAGATTAATCGGATCAATGAGGATCTTGAGATTGAGAAAAAATGCAGTGAAGCGCTGTCTAAGCAAAGAAAAGTGGCACAAGAACAGTTCTGGTGGGCTTCTCCAATTGAAGAGATGAATGGAGAGCAACTTCATCAAATGAAGTTGGCTCTTGAGAATCTGAAGAAGAATGTCATTGATGTTGTGGAAAGTAACAATGTCATTCAGGGTGGTTCTTCTGCTATCCCACCTCCTCACTTTTTTACAGGTGGCCCATCTTCTTCAAACAACCCTCTGCCGCTTCATCAGCCACCAACTCAGCAGTTTCCGGTGTACCCATCGCCGCCACCACCACCACCACCACATATGCTTCAGAACCAGCCCATGATGCTGCCCAATCATATGTTCAATGGGGCCATGATGCATCACCCTTCCTTCAATAATAATAACATGGGAGGATTTGGACCTGCAGGTGGATTCTTTTGA 783 0.4406 MPNSNPRRSKGRQKIEMKKITNESNLQVTFSKRRSGLFNKASELSTLCDAQVALVVFSPGNKVFSFGDPSVDAVINRYQMRDQPQNLRDMYFLENHRNTNVQELNDKINRINEDLEIEKKCSEALSKQRKVAQEQFWWASPIEEMNGEQLHQMKLALENLKKNVIDVVESNNVIQGGSSAIPPPHFFTGGPSSSNNPLPLHQPPTQQFPVYPSPPPPPPPHMLQNQPMMLPNHMFNGAMMHHPSFNNNNMGGFGPAGGFF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1878 260 PANTHER MADS BOX PROTEIN 10 168 - -
Lal13g1878 260 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Lal13g1878 260 Gene3D - 22 89 IPR036879 GO:0003677|GO:0046983
Lal13g1878 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Lal13g1878 260 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Lal13g1878 260 MobiDBLite consensus disorder prediction 186 219 - -
Lal13g1878 260 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 10 168 - -
Lal13g1878 260 CDD MADS_MEF2_like 11 79 IPR033896 GO:0000977|GO:0045944
Lal13g1878 260 Gene3D - 90 174 - -
Lal13g1878 260 SUPERFAMILY SRF-like 11 91 IPR036879 GO:0003677|GO:0046983
Lal13g1878 260 MobiDBLite consensus disorder prediction 202 219 - -
Lal13g1878 260 Coils Coil 98 121 - -
Lal13g1878 260 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Lal13g1878 260 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Lal13g1878 260 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1878 Lal-Chr13 18319325 18320107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1878 7 196 Type I MADS-box Gene Family AT5G60440 51.813 3.75e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal13g1878 SRF-TF 8.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1878 - - lang:109339900 298.516