Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1875 ATGATCATGGAACTCACCCATTCCGATTCTCACTCTCCTCTCCAAATCGATCTCAACCAGATCCCTTCATCTTCTACTTCCCTACACGACGCCATTCAAATCGTTCGTTCTTATCACCAAAACCCTCCTCTACCTCCTGAACCCGCGGCGGTTATACCGCGAGGGTTAACCGTCTGTGCCGCGTGCGGTAAGAACGGGTGCAGTGGGGTCCACGCCATTGTATGTGATGGATGTGAGCGTGGATTTCATGTTTCTTGCGTTGGAGTTCCCTGTGGACGCCGCATCGTGGAGTGGTTGTGTGATGAGTGTGTTGCCGGTGGAGTGAAGAGTAAGCTGTGGCCGTTGGGGGTTAAGTCTAAGAAGCTACTTGATATCAATGCTTCTCCGCCCAGTGATGTTGATTGTGAAGAGTTGCAGGATTCGAGAAAGCACACTGTGGGTGATAATTCTTTTGGTGCCCCGGTTGCATATTCAAATTTACACAACGGGAGTGTTTTTGAATTCCAAAAGGCATCAGGAGTCGCGACACATGCTGTTAGAGTGGGCTTTGATGATATAATAAATCATACACAATCATTTACTAGAAGCTTTGAGGAGGGTCTTAGAGATTTTATATCTGAAAGGTGTGGCGTGCTAGAGGATGGTTGGAGAGTGGAATTTAGACAATCAGTGACCACCTCTGAAGTATATGCAGTTTACCGTGCACCAGATGGGAAGGTATTTGATTCTTTATATGAAGTAGCTTGTTATTTGGGGCTAACATCTGGCTACAAATCTATGGAATCCGAAATAAGAAATGAGAGGTCAGATGGGCCTCAACCATCCAGAAAAAGAAAATCAACAAAAACGCCAGGAGCTAATGCTTATGTAGAAAAGTGGGGAACCTTGATCAGTAGTTATTGTAATGGTCCTCCTTCTGAAGGGTTAAGTGTTGAATGTGCTACTATTGGTGGTAATATCCAACAAGCTACCGAAGCTGAAATTAGAAGAAAAGCGGATGGTCACTCTTGCCTGGAGCAATCTTCTGATGGACTTCCTCTACAGTTCAAGGACTTCTTTGTTCTTTCTTTGGGAAAATTTGATGGTAGACCTTCATATCATGATGTTAACCTTATCTATCCTGTAGGTTATAGATCTTCTTGGCATGATAAGATCACTGGCTCTCTTTTTACATGTGAGGTTTTGGAGGGTGGTGAGTCAGGGCCTATATTTAGGATCGGAAGGTGTTCTTGTTCGAAATATCCTGTTCCAGTTGGGTCAACCATCCTCTCAATGTCAAGTCTTTGTCAACAATTTGTGAGTGAAACCAATGAAGGTGAGAGAAAGACTAATGATGAAATGGATTATGATGGTGATGGAAGTATCCAGATGATCCTTTCAGACCTTTGCGTGCCAACCGAAATTGATGTCACAAGTTGTATAGAAAGTTGCTTGAATGAAGCACACAATACTTGTACATCATACATACCACAGCCTGTTTCTAGTCCAGTTCAAGATAAAACTAGAAATTCGTTAGCTGATGACTCGGGGCCGTTGGATGGAATTGGTGAATTTTTGGTGGAAGAGCGGTCATCATCCTCAGCATGGGGAGTTATGTCTCAAAAGTTAGTCAACGCCTGCAAGGATATCTGCAAGCAGAAAGGCACTCTCAAGTTCTACTGTAAACATGTTGAAAACGAAACATGCTTACATGAATGGGATACAGTGAATGGAAAAAGTCAGTCACACTTTTCTTCATTGGATAAATTCTGTGCTTCAATTGGTTCAGTCAGCATACCAGATGTAATTCATGCAGATAATGATCTGGATAGTCTCTCTGTGGTCTTAGTAAAATGGTTGGGACCTGATAGATTTGGATTAGATGTCGAATTTGTACAAGAAGTATTAGAACAGCTTCCTGGCGTCCAAGATTCTTTGCATTATGAACTTCTAAACAGTAGAATTAACCACTCTTCATTTCCAACAGTCGAAAATGGTTTCATAGTGGTTGAACGGAGAGGTGGATCACATTATCAGGAAGAAGAAGCTCATGGTTTATATAGGAGCTCCAAGAAAGTGAGGTTGACTGAAAAATGTGTTAAGGAAGATCGTTGTCCACCACCTCCTGGGAAGCCACTGTGCTCTAGAGTTCCTAATGAACATGTTGGGGACATTTTTCAGGCTTGGGAACTTATAGAGCGCTTTCATGAAATTCTTGACCTCAAAGAACCATTGTCGTTAGATGAGCTAGAGAAGGAGCTTATCAACCCATGGTTTGATGGATTGGATTTTCTTCAGAAATCTGAGAGGGAAACGAATGACAGTCAAGTTTTAAATTTGCCAGGTGATGATGGTAGTTGCAGATTCCCAAGGTGTGAAGTTGGTCCATCAGGTTCCATAGAAAGTTCCCATGCATTTATTCAAGTTGAAACAGAAGCAACGAAAGAGGCTGCTCAAGTTAAGCTCGCATCTTTTACTTATGCCAGATGTTTTGGTGTTGCTTTGACCAAGGCACATAATTCCATGCTAAGAGTGCTTATAGGTGAGCTGCAATCAAAAGTGGCTGCTCTGGTAGATCCACGTTTTGAACCTGAAGAGACACGAAGTAGACGGGGAAGAAGGAAAGATTTTGATATTGCAGCTCCTGCGAAACGAACTAAACTCAATATGCTTCCTAATAATGAATTGACTTGGCCAGAATTAGCTCGTAGATACATCTTGGCTATCTTAGCAATGGACGGTAACCTGGACTCTGCAGAAACTACTGCACGCGAAAGTGGTAAAGTATTTCGTTGCTTGCGAGGTGACGGTGGTTTGCTGTGTGGCTCCCTTTCTGGCGTGGCTGGGATGGAAGCAGATGCACAGTTGTTTGCAGAGGCTGAAAAGAAAATTTTTGGGTCTTTGATCAAAGACAATAATGTACTAACCATTGAAGATGAGGAGCCTGATGTGAAGGATGCTTCTGAAAACCTTCTGGGCGGTGAAGGCAGTATTCCAGAATGGGCAAAAGAACTAGAACCTGCTAGGAAACTACCAACAAACGTTGGAACCCGCATCCGAAGATGTGTTTACAATGCTCTGGAGAAGAATCCACCAGAGTGGGCAAAAAAAATTCTGCAGCATTCAATCAGTAAGGAAGTGTACAAGGGCAATGCATCTGGGCCAACAAAGAAAGCAGTTATTTCAGTGTTGACTACTGTATCTGGTGAAGGATTGCAACAGAAGCCACCCAAGAAAGGAAGGAAAACAAAGACTGAAATATCTATTTCTGATATTGTCATGAAACAATGTCGCATTGTATTACGTCGTGCAGCTGCTGCAGATGATTCAAAGGTTTTTTGCAATTTGCTGGGAAGAAAATTAATTAACTGTTCAGATAATGATGATGAGGGGTTTCTTGGATCTCCAGCTATGGTGGCCCGTCCTCTTGACTTCCGGACTATTGACCTAAGGTTGGCTGCTGGAGCTTATGGTGGATCTCATGAAGCATTTTTTGAGGATGTTCACGAGCTGTGGAACAATGTTCGCATTGCTTTTGGAGATCAACCTGATTTAGTTGAACTGGCTGAAAATTTATCCCGGAACTTTGAATTGTTGTATAATGAGGAGGTTGTCACTTACGCCCAAAAATTTATGGACTATGCTAAACTGGGATGCTTAAATGCAGAGATGAGAAAAGAAGTTGACAATTTTATTGCATCAACAAGAGATATTCCTAAGGCCCCCTGGGATGAGGGAGTGTGTAAAGTATGTGGCATTGATAGGGATGATGACAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTACATCCTCCACTTGCTAGGATCCCTGAAGGAAACTGGTACTGCCCTTCTTGTGTTGATGATAAACTTGCAACTCAAGATGTCACAGAGCATACACATATTATTTTCAAACATCGAAGGAAAAGATTCCGTGGAGAAGTTAGTTCTCTTTACTTGGAAGCACTAACTCATTTATCAAATGTAATGGAAGAAAAAGAATATTGGGAGTACACCGTGGGCGAGAGAACTTTCCTTCTCAAGTTTTTATGTGATGAGTTGCTTAACTCTTCCCTAGTACGCCAGCATCTTGAGCATTGTGCAGAGTTGTCTGTTGAGTTACAGCAGAAATTGCGTGCATTTTCTGTTGAGTGGAAAGGTCTTAAAGCTAAAGAAGACATCTTATCCGCAAAAGCTACAAAAATTGATACATGCTCTCTTAATTCTGCTGGAGAAGTTGTTCACAAGGAAGGATCTGTGACAAACTCTGAAACTGATAGCCAATATATGAATTCCATAGATGTTGAGGAGCAACATAGGAATATCTCTGCAGCAGTGGAGTCTCAATGTAGTCATAAATCCACTAATTCTTCTCCATCACCAAATCACATGGCTCGAGAAATGAACAATGCTGGTGGAGCAGATCATCATATCCAGTGTAACGTCCAGAAATGTGAGGGAAGGGATGTATCTACTCTTGTGACATCCAAACAAGGACAAGGTGTGCCTGTTGATGCTCCTCCTCAGATTGCTGCATATGAAGCTGAACCTTACCATGTTGAGCTCAATGCAACCAAGCGTCAAATTTCAACACTACAGGATTCCATAACTAGTGCACAATCACAGCTACTAAAGCTCCCTGTTCGCCTGGATTTTTTGGGTACTGATTACATTGGTCGACTCTACTGGTCTTCAGCTATGCCCAGAGGGCGTTCATGTATAGTTGTTGATGCTAGTCATGTGTTGCACGGGAGAGGAGTGGTGGTTAACAGAGACTCTTCAGAGAAGTTTTCTTTTGTGCATCGTTCTGCACTATCTGGCAAGGACTCATCTCCTCTAATGTCTCTACCAAGTAATGCTTTGGGCCTTAGTTCACTGTGGGTTGCTTATGAAACTGATGCAGAAGTCGAGGAGCTCTTATGTTGGCTGAAGGATAATGAGACCAAGGAAAAAGAACTGAAAGATTCCATCACGCAGTGGTCAAAATCAAGATTTCATGAGTTGATTAGTGCCCAGACTGATGGTTGGGTTGAGGACCAAGGGCCATTTTCTATCCCAGGAAACAGAGAGAAAATAGTCTCTAATTCTCTTGTTATGAAGGCAACGTTGTTGTTGGAAGAGAAATATGGACCTTTCTTTAAATGGGATACCATTGATGCGATGATGAAGCAGTGCAAAAAGGCCAGAAACACCAATGATGAAAAAATGTACAGGTGTGAATGCTTAGAGCCCATTTGGCCTTCTAGGAAACACTGCATGTCTTGCCACAAAACTTTTCTTAATAATGCTGAACTAGAGGGGCACAATGATGGTAAATGTAATGCTGGTCTTCGGGCCTCGGAGAAGAATAAAGATAATAGTGGATCTTCTAAAGGAAGAGGGAACTTGAAATGTGGTATCTCAAGTAAAAAATTCAGAGGTGAGGCTGACACAGCTGGAACCTCAACTGGTGGAGGTTCAACTTCAAATCTTAGCTCAAGATTGATTAGATTTTCAAATGAAGGATCCTCGTGCCCATTTAACTTTGAAGATATATGTTCGAAGTTTGTAACAAATGATTCCAACAAGGAACTTGTCAGGGAGATAGGTCTTATTGGTTCAGATGGTAACCCATCCTTTGTTCCTTCCGTATCTCCCTTTGTTAGTGATTCTACAGTTATGCTATTCTCAGCAAAAAAGGATGATGACAGTGTTGTTGGTGCGTCCAAAGCTTCAGAAAGCCAAGTCTCTCATGGAGGCACTGGTGGAGCTGGCATATCTGTGGCCAGGTTAGCTACAAATGAAAACAATAAAGTAGGGAAATCCGACACATCTTTGGTAGAACGAAGAGATGGAAAGTCCTCTTTCCCTAGTCATGCTTCCAATATGGGGGTTGATGGCTGCTGTGTGGTCCCTTCATCTTCGTTGAGACCATTAGTTGGAAGGGTTTCACATATTCTGAGGCTACTGAAGATTAGTCTACTTGATATGGATGCTGCACTCCCGAAAGTTGCTCTAAAACCATCAAAGGCAGAGCTGAACAGAAGACAAGCCTGGTGTGCATTCGTCAAATCTGCTGACACAATATATGAGATGGTTCAGGCAACAATCACATTAGAAGATATGATAAAGACAGAGTACCTTAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCTAAATCTTCTACTTTGTCTTCCCTTGCACTTCGCTTGTACTCTCTTGATTCGGCCATTATATATGAGAAACTGCCCAGTTCAAGTATTACTGACAGCCCCGAACCTTCTTCCATAGTGGAACCGAAGCAACAACTGATCATTGTTGATGCAGATAAATCCAAAGCATGTCGGAAGTCAAACAGGAAAAGGAAGGAATCAGATGGCTGA 6369 0.4235 MIMELTHSDSHSPLQIDLNQIPSSSTSLHDAIQIVRSYHQNPPLPPEPAAVIPRGLTVCAACGKNGCSGVHAIVCDGCERGFHVSCVGVPCGRRIVEWLCDECVAGGVKSKLWPLGVKSKKLLDINASPPSDVDCEELQDSRKHTVGDNSFGAPVAYSNLHNGSVFEFQKASGVATHAVRVGFDDIINHTQSFTRSFEEGLRDFISERCGVLEDGWRVEFRQSVTTSEVYAVYRAPDGKVFDSLYEVACYLGLTSGYKSMESEIRNERSDGPQPSRKRKSTKTPGANAYVEKWGTLISSYCNGPPSEGLSVECATIGGNIQQATEAEIRRKADGHSCLEQSSDGLPLQFKDFFVLSLGKFDGRPSYHDVNLIYPVGYRSSWHDKITGSLFTCEVLEGGESGPIFRIGRCSCSKYPVPVGSTILSMSSLCQQFVSETNEGERKTNDEMDYDGDGSIQMILSDLCVPTEIDVTSCIESCLNEAHNTCTSYIPQPVSSPVQDKTRNSLADDSGPLDGIGEFLVEERSSSSAWGVMSQKLVNACKDICKQKGTLKFYCKHVENETCLHEWDTVNGKSQSHFSSLDKFCASIGSVSIPDVIHADNDLDSLSVVLVKWLGPDRFGLDVEFVQEVLEQLPGVQDSLHYELLNSRINHSSFPTVENGFIVVERRGGSHYQEEEAHGLYRSSKKVRLTEKCVKEDRCPPPPGKPLCSRVPNEHVGDIFQAWELIERFHEILDLKEPLSLDELEKELINPWFDGLDFLQKSERETNDSQVLNLPGDDGSCRFPRCEVGPSGSIESSHAFIQVETEATKEAAQVKLASFTYARCFGVALTKAHNSMLRVLIGELQSKVAALVDPRFEPEETRSRRGRRKDFDIAAPAKRTKLNMLPNNELTWPELARRYILAILAMDGNLDSAETTARESGKVFRCLRGDGGLLCGSLSGVAGMEADAQLFAEAEKKIFGSLIKDNNVLTIEDEEPDVKDASENLLGGEGSIPEWAKELEPARKLPTNVGTRIRRCVYNALEKNPPEWAKKILQHSISKEVYKGNASGPTKKAVISVLTTVSGEGLQQKPPKKGRKTKTEISISDIVMKQCRIVLRRAAAADDSKVFCNLLGRKLINCSDNDDEGFLGSPAMVARPLDFRTIDLRLAAGAYGGSHEAFFEDVHELWNNVRIAFGDQPDLVELAENLSRNFELLYNEEVVTYAQKFMDYAKLGCLNAEMRKEVDNFIASTRDIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLHPPLARIPEGNWYCPSCVDDKLATQDVTEHTHIIFKHRRKRFRGEVSSLYLEALTHLSNVMEEKEYWEYTVGERTFLLKFLCDELLNSSLVRQHLEHCAELSVELQQKLRAFSVEWKGLKAKEDILSAKATKIDTCSLNSAGEVVHKEGSVTNSETDSQYMNSIDVEEQHRNISAAVESQCSHKSTNSSPSPNHMAREMNNAGGADHHIQCNVQKCEGRDVSTLVTSKQGQGVPVDAPPQIAAYEAEPYHVELNATKRQISTLQDSITSAQSQLLKLPVRLDFLGTDYIGRLYWSSAMPRGRSCIVVDASHVLHGRGVVVNRDSSEKFSFVHRSALSGKDSSPLMSLPSNALGLSSLWVAYETDAEVEELLCWLKDNETKEKELKDSITQWSKSRFHELISAQTDGWVEDQGPFSIPGNREKIVSNSLVMKATLLLEEKYGPFFKWDTIDAMMKQCKKARNTNDEKMYRCECLEPIWPSRKHCMSCHKTFLNNAELEGHNDGKCNAGLRASEKNKDNSGSSKGRGNLKCGISSKKFRGEADTAGTSTGGGSTSNLSSRLIRFSNEGSSCPFNFEDICSKFVTNDSNKELVREIGLIGSDGNPSFVPSVSPFVSDSTVMLFSAKKDDDSVVGASKASESQVSHGGTGGAGISVARLATNENNKVGKSDTSLVERRDGKSSFPSHASNMGVDGCCVVPSSSLRPLVGRVSHILRLLKISLLDMDAALPKVALKPSKAELNRRQAWCAFVKSADTIYEMVQATITLEDMIKTEYLRNDWWYWSSFSAAAKSSTLSSLALRLYSLDSAIIYEKLPSSSITDSPEPSSIVEPKQQLIIVDADKSKACRKSNRKRKESDG 2122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1875 2122 SUPERFAMILY Bromodomain 1077 1195 IPR036427 GO:0005515
Lal13g1875 2122 SUPERFAMILY DNA-binding domain 203 257 IPR016177 GO:0003677
Lal13g1875 2122 Gene3D - 1068 1195 IPR036427 GO:0005515
Lal13g1875 2122 Pfam Bromodomain 1129 1183 IPR001487 GO:0005515
Lal13g1875 2122 MobiDBLite consensus disorder prediction 1777 1799 - -
Lal13g1875 2122 MobiDBLite consensus disorder prediction 1444 1464 - -
Lal13g1875 2122 Pfam Methyl-CpG binding domain 203 256 IPR001739 GO:0003677
Lal13g1875 2122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1196 1300 IPR013083 -
Lal13g1875 2122 MobiDBLite consensus disorder prediction 262 285 - -
Lal13g1875 2122 Pfam PHD-finger 1240 1286 IPR019787 -
Lal13g1875 2122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 112 IPR013083 -
Lal13g1875 2122 SMART PHD_3 58 104 IPR001965 -
Lal13g1875 2122 SMART PHD_3 1240 1286 IPR001965 -
Lal13g1875 2122 PANTHER OS02G0192300 PROTEIN 10 2122 - -
Lal13g1875 2122 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 10 2122 - -
Lal13g1875 2122 ProSiteProfiles FYR domain FYRN motif profile. 344 397 IPR003888 GO:0005634
Lal13g1875 2122 Coils Coil 1521 1541 - -
Lal13g1875 2122 MobiDBLite consensus disorder prediction 1444 1468 - -
Lal13g1875 2122 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1320 1364 IPR028942 -
Lal13g1875 2122 Gene3D - 345 457 - -
Lal13g1875 2122 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 202 269 IPR001739 GO:0003677
Lal13g1875 2122 ProSiteProfiles FYR domain FYRC motif profile. 570 645 IPR003889 GO:0005634
Lal13g1875 2122 SUPERFAMILY FYVE/PHD zinc finger 56 110 IPR011011 -
Lal13g1875 2122 ProSiteProfiles Zinc finger PHD-type profile. 56 106 IPR019787 -
Lal13g1875 2122 ProSiteProfiles Zinc finger PHD-type profile. 1238 1288 IPR019787 -
Lal13g1875 2122 ProSitePatterns Zinc finger PHD-type signature. 1241 1285 IPR019786 -
Lal13g1875 2122 ProSiteProfiles Bromodomain profile. 1131 1179 IPR001487 GO:0005515
Lal13g1875 2122 MobiDBLite consensus disorder prediction 262 277 - -
Lal13g1875 2122 CDD PHD1_Lid2p_like 1240 1285 - -
Lal13g1875 2122 ProSitePatterns Zinc finger PHD-type signature. 59 103 IPR019786 -
Lal13g1875 2122 Gene3D - 201 292 - -
Lal13g1875 2122 SUPERFAMILY FYVE/PHD zinc finger 1230 1288 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1875 Lal-Chr13 18191517 18205245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1875 9 2122 C2H2 Transcription Factor Family AT3G01460 44.229 0.0 1661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal13g1875 Bromodomain 9.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1875 K22768 - gmx:100791814 2797.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1875 13 18191517 18205245 Lal13g1875 13 18191517 18205245 ECH
Lal12g1509 12 18318856 18332610 Lal13g1875 13 18191517 18205245 LSH
Lal13g1875 13 18191517 18205245 Lal24g1432 24 15619610 15634873 LSH