Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal13g1866 ATGAGTAAAAGTAGTGGCATGGTTACAAAGAAAAATAATGGTTCTATTAGGTCTATTTTCATGCATGCTGATGCCCATGACTGGTTTCTTATGGTCTTGGGTTTCATTGGTGCCATTGGTGATGGCTTCTCTATCCCTTTGGTGTTGCTTATAACTAGCAAAATTATGAATAATATTGGTGCTTCATCTATCAACTCAGGAACCACTTTCATCCACAAAATGAATCAGAATGCAGTGGATTTGCTATACTTGGCTATTGGATCTTTTGTTGCTTGCTTCTTAGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGTTAGATACTTAAAAGCAATTCTGAGACAAGAAGTTGCATACTTTGATTTGCATGTTACAAGCACTTCTGAAGTTATCACTAGTGTCTCTAATGACACCCTTGTAATTCAAGATTGCCTTGCTGAAAAGGCACCAAATTTTGTGACAAATATTTCAATGTTTGGTGGGAGCTACATAGTGGCTTTTGCATTGCTTTGGAGATTGGCCATAGTGGGGTTTCCTTTTGTGATTCTGCTTGTGATCCCTGGTTTAATATATGGAAGAACATTAATGGGTTTGGCTAGGAAGATAAGAGAAGAATATAATAAAGCTGGTACAATAGCAGAACAAGCAATATCATCCATTAGAACTGTGTATTCTTTTGTTGGTGAAAGCAAGAGCATAGTTGCTTTCTCTGATTCTCTACAAGGGTCAGTTAAGTTAGGGTTAAAACAAGGACTAGCTAAAGGGTTAGCCATTGGAAGCAATGGTGTTGTTTTTGCTATTTGGTCCTTTATGTCTTGGTATGGTAGCAGAATGGTTATGTATCATGCCTCTAAAGGAGGGACTGTTTTTGCTGTTGGAGCTTCCATATCTGTTGGTGGATTAGCATTAGGTGCTGCTTTATCTAATGTGAAGTACTTCTCAGAAGCAAGCAGTGCAGCAGAACAAGTAATGGAAGTGATAAGAAGAGTTCCAAAGATTGATTCAGACAACATGGATGGTGACATTCTAGACAATTTTTCAGGACAAGTTGAATTTGATAAGGTTAAATTTGCATACCCATCAAGGCCAGACAACATTATATTGAATGAAATGTGCTTGAAGGTTCCAGCAGGTAAGACATTGGCCTTAGTTGGTGGGAGTGGGTCAGGGAAATCAACAGTGATAGCACTTTTGCAAAGGTTTTATGACCCTATTGGTGGAGAGATAAGGGTTGATGGGGTTGCTACTAATAAGTTGCAACTAAAATGGTTAAGGTCTCAAATGGGTTTGGTTAGTCAAGAACCTGTTTTGTTTGCAACAAGTATTAAAGATAATATACTTTTTGGAAGAGAGAATGCTACACAAAATCAGATTGTGGAATCTGCTAAAGCTTCCAATGCTCATGATTTCATATCTTTGTTGCCTAATGGATACAATACCCAAGTTGGTGAAAGAGGTGTTCAAATGTCTGGTGGAGAAAAACAAAGAATAGCAATTGCTAGAGCAATTATAAAAAAACCAAGAATCCTTCTCCTTGATGAAGCAACAAGTGCATTAGACACAGAATCTGAAAGAAACGTGCAAGAAGCTCTAGAAAAAGCAGCATTAGGAAGAACTACAATTATCATAGCTCACAGATTATCCACTATTAGAAATGCAGATACTATAGCTGTTATGCAAAATGGAAAAATCATGGAAATGGGGTCACATAATGAACTTATACAAAATGATCATGGTCTTTATACTTCACTAATTCATCTTCAGCAAATAGAGAACACAAAAACTGACCAAGATGATTATAATAACACTTACCCTCTTCCTAATTCATCTATACTATCAAATAGAGAAAACATTCACAACACTAGTAGCCGAAGATTATCGACTGTGAGTCGTTCTAGTAGCGCGAGTTCAGCGCTGCGTGCTTCAATCAACGACGGTGATGATGTTGAAGATGTTGTAGAAGATGACAAGTTACCTGTTCCTTCATTTTGGAGGTTGTTGGCATTGAATTTACCTGAGTGGAAGCAAGCATGTTTGGGATGCTTGAATGCATTGTTGTTTGGTGCTGTTCAACCTACTTATGCATTTGCAATGGGGTCAATGATATCTGTTTATTTTCTAACAGATCATGAGGAGATTAAGAAGAAGACAAGGATATATTCTGTGTGTTTTTTGGGATTGGCTTTGTTCTCTTTGGTTGTTAATATCTTACAGCATTATAATTTTGCTTACATGGGTGAGTACTTGACCAAAAGGGTGAGAGAGAGAATGTTTTCCAAAATTCTCACTTTTGAAGTTGGTTGGTTTGATCAGGATGAGAATTCCACTGGTGCTGTTTGCTCTAGACTTGCAAAAGATGCCAATGTGGTAAGGTCATTAGTAGGAGACAGAATGGCTCTATTGGTTCAAACAATCTCAGCAGTGGTAATAGCATGCACAATGGGCTTGATCATTGCATGGAGACTAGCCATAGTTATGATAGCAGTTCAGCCCATTATTATAGCATGCTTCTACACAAGACGTGTCTTACTCAAAAGCATGTCTGAAAAGGCCATCAAATCCCAAGAGGAAAGTAGCAAGCTAGCTGCAGAAGCTGTTTCCAACCTTAGAACCATTACTGCTTTCTCTTCTCAAGATAGAATCCTCAAAATGCTAGAAAAAGCCCAAGAAGGCCCAAGAAGAGAGAGCATTAGACAATCATGGTTTGCAGGCCTTGGGCTTGCATGTTCTCAGAGCCTCACATCATGCACCTGGGCCTTAGATTTTTGGTATGGTGCCAAGCTTATCTCACATGGGTATATCACAAGCAAGCAACTTTTTGAGACCTTCATGATATTGATAAGCACAGGTAGGGTCATTGCTGATGCAGGTAGCATGACTAGTGACCTTGCTAAAGGAGCAGATGCTGTGGGCTCAGTTTTTGCAGTCCTTGATAGGTACACAAAAATTGAGCCTGATGACACAGAAGGTTACAAGCCAGAGAAGTTAAGAGGCCAAATTGAACTAAATGATGTCCATTTTGCATATCCAGCTAGGCCTAATATAATGATTTTCCAAGGCTTCTCAATGAAAATTGATGCTGGAAAATCAACAGCATTGGTGGGGCAAAGTGGTTCAGGCAAGTCAACAATAATAGGCTTAATAGATAGATTCTATGATCCACACAAAGGGACAGTGACATTAGATGGTAGAGACATAAAGTCATATCACCTAAGATCACTTAGGAATCACATTGCACTAGTGAGTCAAGAGCCAACATTGTTTGGTGGGAGCATAAGGGATAACATTGCATATGGAGCTTCTGATAATAAAACTAGTGAAGCTGAGATCATAGAAGCATCAAGGGCTGCAAATGCACATGACTTCATTGCAAGCTTGAAAGAAGGTTATGGCACATTCTGTGGTGACAAAGGTGTGCAACTCTCTGGGGGTCAGAAGCAAAGAATTGCAATAGCAAGAGCCATATTGAAGAACCCTGAGGTGTTGCTTATGGATGAAGCTACAAGTGCACTTGACAGCCAATCTGAGAAGCTTGTGCAAGATGCATTGGAAAGGGTTATGGTAGGTAGGACTAGTGTGGTTATAGCTCATAGATTGAGCACTATACAAAACTGTGATGTGATTGCTGTGTTGGATAAAGGAAAGGTTGTGGAAAAAGATAGATGGATTATAGATGATTCAACAGGGCAACGTTTTAAGCTAGTTTGTGCCAATTGGGCTGGTCACCTTCAACCAATGTTACCAGAAGGCCTTGATAAGCAACCATTAAGGTACCTTGTTGCACAAGTTGTTAAAAACAAGTTCAATTGTATTCGTCTCACTTATGCAGTTTATATGTGGACACGTTATGGCAATCAAATTGTGGAAGATACATTGAAGTATTTGGATATACCTGAGGTGGTGAAAGGGATAGAAAAAACTAACCCATCTTTGTTGAAGATGACTCACATACAAGTTTTTGATTTGGTGATTAAAGAACTTGGTGCTTATAATGTGAAGGTGTTGTTAGATAACCATGTTAGTGAGCCAAAATGGTGTTGTAATAAGAATGATGATAATGGATTCTTTAATGACAGAAATTTCAAACCTGTGGAATGGTTGCATAGCCTTGATTTAGCAGCCAAGCACTTTTCTGGAAATTCTGCTGTAGTGGCAATGAGCTTGAGGAATGAACTGCGCGGTCCACGCCAAAATGAGGGTGATTGGTACAATTACATGGCACAAGGAGCAGCAGCTATTCACAAGACCAATGCAGAGGTTCTAGTGGTTGTCTCAGGTTTGAATTATGACACTGAGTTTCAATTCTTAAAGAAGAAACCAATGAAGATAGACTTAGGTAAAAAATTGGTGTATGAGACACATTTGTATTCTTGGTCTGGTGTTGGTACTCTCAAATTGAAAGATATATGGACTTCACAACCATTAAACAGGATATGTGCTAATAGCATTGAAGGATTAGAGAAGCAAGCAGGGTTTCTTACCACTGGTAAGGATGCAGCACCTTTAATCTTGAGTGAGTTTGGTTTTGATCAGCAAGGTTCTACAGTATCAGACAACAAGTTTTTGACTTGCCTTCAAACTTACCTTGTTGAGAAGGACTTGGATTGGTGCTTGTGGGCATTCCATGGTGGTTATTACCTAAGAGAGGACAAAGTTCATCCTGATGAGTCTTTTGGTGTGTTGGATGCCTCTTGGAAAAGGTTAAGATACCCAAACTTCATTGACAAGTTTCAACTTCTGCAAAGAAAAAATCAAGATCCTAGTTCAAAAAATTCCAATGAATATATCTTGTATCACCCCTTAAGTGGTGAATGTGTACAAGTGAATAGAAAGAATGAAGTTGAAGTTGGTAGCTGTAGGACAAAAGATAGATGGATGCATGATGCAGATGGGGCTCATATAATTTTGGTCAGCAATAAGAAGTGCCTAAGTGCAACTAGAGAAGGAATTCCAACAATGATTTCTGATGATTGCAACAAGAGTTCTTCTTGGAAATATGCATCACTTTCCAAGCTACATTTGGCAACCACAGATCAAAATGGAGAGCAGTTTTGCTTGCAGAAGGAATCCAACTCATCCAGAATTGTGACTTCAAAATGTATTTGCATTAAAGATAATTCTACATGTTTAGATGATCCTCAAAACCAGTGGTTTAAGCTTGTCCCCACCAATTTGTAG 5196 0.3888 MSKSSGMVTKKNNGSIRSIFMHADAHDWFLMVLGFIGAIGDGFSIPLVLLITSKIMNNIGASSINSGTTFIHKMNQNAVDLLYLAIGSFVACFLEGYCWTRTGERQAARMRVRYLKAILRQEVAYFDLHVTSTSEVITSVSNDTLVIQDCLAEKAPNFVTNISMFGGSYIVAFALLWRLAIVGFPFVILLVIPGLIYGRTLMGLARKIREEYNKAGTIAEQAISSIRTVYSFVGESKSIVAFSDSLQGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMSWYGSRMVMYHASKGGTVFAVGASISVGGLALGAALSNVKYFSEASSAAEQVMEVIRRVPKIDSDNMDGDILDNFSGQVEFDKVKFAYPSRPDNIILNEMCLKVPAGKTLALVGGSGSGKSTVIALLQRFYDPIGGEIRVDGVATNKLQLKWLRSQMGLVSQEPVLFATSIKDNILFGRENATQNQIVESAKASNAHDFISLLPNGYNTQVGERGVQMSGGEKQRIAIARAIIKKPRILLLDEATSALDTESERNVQEALEKAALGRTTIIIAHRLSTIRNADTIAVMQNGKIMEMGSHNELIQNDHGLYTSLIHLQQIENTKTDQDDYNNTYPLPNSSILSNRENIHNTSSRRLSTVSRSSSASSALRASINDGDDVEDVVEDDKLPVPSFWRLLALNLPEWKQACLGCLNALLFGAVQPTYAFAMGSMISVYFLTDHEEIKKKTRIYSVCFLGLALFSLVVNILQHYNFAYMGEYLTKRVRERMFSKILTFEVGWFDQDENSTGAVCSRLAKDANVVRSLVGDRMALLVQTISAVVIACTMGLIIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSEKAIKSQEESSKLAAEAVSNLRTITAFSSQDRILKMLEKAQEGPRRESIRQSWFAGLGLACSQSLTSCTWALDFWYGAKLISHGYITSKQLFETFMILISTGRVIADAGSMTSDLAKGADAVGSVFAVLDRYTKIEPDDTEGYKPEKLRGQIELNDVHFAYPARPNIMIFQGFSMKIDAGKSTALVGQSGSGKSTIIGLIDRFYDPHKGTVTLDGRDIKSYHLRSLRNHIALVSQEPTLFGGSIRDNIAYGASDNKTSEAEIIEASRAANAHDFIASLKEGYGTFCGDKGVQLSGGQKQRIAIARAILKNPEVLLMDEATSALDSQSEKLVQDALERVMVGRTSVVIAHRLSTIQNCDVIAVLDKGKVVEKDRWIIDDSTGQRFKLVCANWAGHLQPMLPEGLDKQPLRYLVAQVVKNKFNCIRLTYAVYMWTRYGNQIVEDTLKYLDIPEVVKGIEKTNPSLLKMTHIQVFDLVIKELGAYNVKVLLDNHVSEPKWCCNKNDDNGFFNDRNFKPVEWLHSLDLAAKHFSGNSAVVAMSLRNELRGPRQNEGDWYNYMAQGAAAIHKTNAEVLVVVSGLNYDTEFQFLKKKPMKIDLGKKLVYETHLYSWSGVGTLKLKDIWTSQPLNRICANSIEGLEKQAGFLTTGKDAAPLILSEFGFDQQGSTVSDNKFLTCLQTYLVEKDLDWCLWAFHGGYYLREDKVHPDESFGVLDASWKRLRYPNFIDKFQLLQRKNQDPSSKNSNEYILYHPLSGECVQVNRKNEVEVGSCRTKDRWMHDADGAHIILVSNKKCLSATREGIPTMISDDCNKSSSWKYASLSKLHLATTDQNGEQFCLQKESNSSRIVTSKCICIKDNSTCLDDPQNQWFKLVPTNL 1731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal13g1866 1731 ProSitePatterns ABC transporters family signature. 495 509 IPR017871 GO:0005524
Lal13g1866 1731 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 16 1225 - -
Lal13g1866 1731 Pfam ABC transporter 1025 1175 IPR003439 GO:0005524
Lal13g1866 1731 Pfam ABC transporter 374 523 IPR003439 GO:0005524
Lal13g1866 1731 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 32 321 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g1866 1731 SMART AAA_5 1033 1207 IPR003593 -
Lal13g1866 1731 SMART AAA_5 383 569 IPR003593 -
Lal13g1866 1731 SUPERFAMILY ABC transporter transmembrane region 25 340 IPR036640 GO:0005524|GO:0016021
Lal13g1866 1731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 595 IPR027417 -
Lal13g1866 1731 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 16 1225 IPR039421 -
Lal13g1866 1731 Gene3D ABC transporter type 1, transmembrane domain 19 973 IPR036640 GO:0005524|GO:0016021
Lal13g1866 1731 CDD ABC_6TM_Pgp_ABCB1_D2_like 673 989 - -
Lal13g1866 1731 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524
Lal13g1866 1731 CDD ABC_6TM_Pgp_ABCB1_D1_like 31 329 - -
Lal13g1866 1731 CDD ABC_MTABC3_MDL1_MDL2 1006 1225 - -
Lal13g1866 1731 Gene3D - 997 1225 IPR027417 -
Lal13g1866 1731 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 690 971 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g1866 1731 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1244 IPR003439 GO:0005524
Lal13g1866 1731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1225 IPR027417 -
Lal13g1866 1731 Pfam ABC transporter transmembrane region 31 298 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g1866 1731 Pfam ABC transporter transmembrane region 685 954 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lal13g1866 1731 Gene3D - 346 595 IPR027417 -
Lal13g1866 1731 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 356 592 IPR003439 GO:0005524
Lal13g1866 1731 Gene3D Glycosidases 1226 1587 - -
Lal13g1866 1731 SUPERFAMILY ABC transporter transmembrane region 670 990 IPR036640 GO:0005524|GO:0016021
Lal13g1866 1731 SUPERFAMILY (Trans)glycosidases 1225 1578 IPR017853 -
Lal13g1866 1731 Pfam Cellulase (glycosyl hydrolase family 5) 1261 1547 IPR001547 GO:0004553|GO:0071704
Lal13g1866 1731 CDD ABC_MTABC3_MDL1_MDL2 356 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal13g1866 Lal-Chr13 18104151 18113637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal13g1866 70 600 Calmodulin-binding Proteins AT2G36910 37.640 1.09e-102 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal13g1866 K05658 - gmx:100807709 1930.61